Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TRAV40A0A0B4J280 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV40A0A0B4J280 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV40A0A0B4J280 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC19.16■□□□□ 0.66
TRAV40A0A0B4J280 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV40A0A0B4J280 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV40A0A0B4J280 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV40A0A0B4J280 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV40A0A0B4J280 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV40A0A0B4J280 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.16■□□□□ 0.66
TRAV40A0A0B4J280 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV40A0A0B4J280 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV40A0A0B4J280 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV40A0A0B4J280 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV40A0A0B4J280 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV40A0A0B4J280 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19.15■□□□□ 0.66
TRAV40A0A0B4J280 AC092028.1-203ENST00000608262 953 ntBASIC19.15■□□□□ 0.66
TRAV40A0A0B4J280 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
TRAV40A0A0B4J280 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV40A0A0B4J280 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TRAV40A0A0B4J280 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
TRAV40A0A0B4J280 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.14■□□□□ 0.65
TRAV40A0A0B4J280 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.14■□□□□ 0.65
TRAV40A0A0B4J280 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
TRAV40A0A0B4J280 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV40A0A0B4J280 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV40A0A0B4J280 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV40A0A0B4J280 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV40A0A0B4J280 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.13■□□□□ 0.65
TRAV40A0A0B4J280 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.13■□□□□ 0.65
TRAV40A0A0B4J280 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.13■□□□□ 0.65
TRAV40A0A0B4J280 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
TRAV40A0A0B4J280 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.13■□□□□ 0.65
TRAV40A0A0B4J280 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV40A0A0B4J280 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.13■□□□□ 0.65
TRAV40A0A0B4J280 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV40A0A0B4J280 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
TRAV40A0A0B4J280 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
TRAV40A0A0B4J280 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV40A0A0B4J280 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV40A0A0B4J280 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV40A0A0B4J280 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.12■□□□□ 0.65
TRAV40A0A0B4J280 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
TRAV40A0A0B4J280 MTDHP2-201ENST00000601468 714 ntBASIC19.12■□□□□ 0.65
TRAV40A0A0B4J280 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV40A0A0B4J280 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV40A0A0B4J280 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC19.11■□□□□ 0.65
TRAV40A0A0B4J280 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
TRAV40A0A0B4J280 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.11■□□□□ 0.65
TRAV40A0A0B4J280 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.11■□□□□ 0.65
TRAV40A0A0B4J280 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV40A0A0B4J280 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC19.11■□□□□ 0.65
TRAV40A0A0B4J280 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV40A0A0B4J280 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV40A0A0B4J280 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
TRAV40A0A0B4J280 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV40A0A0B4J280 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
TRAV40A0A0B4J280 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV40A0A0B4J280 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.1■□□□□ 0.65
TRAV40A0A0B4J280 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.1■□□□□ 0.65
TRAV40A0A0B4J280 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
TRAV40A0A0B4J280 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV40A0A0B4J280 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV40A0A0B4J280 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
TRAV40A0A0B4J280 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV40A0A0B4J280 AC008406.3-201ENST00000620001 1374 ntBASIC19.09■□□□□ 0.65
TRAV40A0A0B4J280 AC090877.2-201ENST00000558441 1738 ntBASIC19.09■□□□□ 0.65
TRAV40A0A0B4J280 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV40A0A0B4J280 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV40A0A0B4J280 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV40A0A0B4J280 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.09■□□□□ 0.65
TRAV40A0A0B4J280 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.09■□□□□ 0.65
TRAV40A0A0B4J280 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.09■□□□□ 0.65
TRAV40A0A0B4J280 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TRAV40A0A0B4J280 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.09■□□□□ 0.65
TRAV40A0A0B4J280 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV40A0A0B4J280 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
TRAV40A0A0B4J280 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.08■□□□□ 0.65
TRAV40A0A0B4J280 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV40A0A0B4J280 AF131216.4-201ENST00000638924 1588 ntBASIC19.08■□□□□ 0.65
TRAV40A0A0B4J280 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
TRAV40A0A0B4J280 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.08■□□□□ 0.64
TRAV40A0A0B4J280 AC010997.5-201ENST00000609182 354 ntBASIC19.08■□□□□ 0.64
TRAV40A0A0B4J280 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV40A0A0B4J280 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV40A0A0B4J280 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.08■□□□□ 0.64
TRAV40A0A0B4J280 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV40A0A0B4J280 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV40A0A0B4J280 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.07■□□□□ 0.64
TRAV40A0A0B4J280 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV40A0A0B4J280 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV40A0A0B4J280 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.07■□□□□ 0.64
TRAV40A0A0B4J280 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.07■□□□□ 0.64
TRAV40A0A0B4J280 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV40A0A0B4J280 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.07■□□□□ 0.64
TRAV40A0A0B4J280 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC19.07■□□□□ 0.64
TRAV40A0A0B4J280 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.07■□□□□ 0.64
TRAV40A0A0B4J280 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV40A0A0B4J280 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV40A0A0B4J280 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms