Protein–RNA interactions for Protein: Q9H3E2

SNX25, Sorting nexin-25, humanhuman

Predictions only

Length 840 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX25Q9H3E2 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
SNX25Q9H3E2 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
SNX25Q9H3E2 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
SNX25Q9H3E2 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
SNX25Q9H3E2 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SNX25Q9H3E2 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC25.22■■□□□ 1.63
SNX25Q9H3E2 AL031848.2-201ENST00000607670 837 ntBASIC25.22■■□□□ 1.63
SNX25Q9H3E2 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SNX25Q9H3E2 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SNX25Q9H3E2 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SNX25Q9H3E2 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SNX25Q9H3E2 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SNX25Q9H3E2 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SNX25Q9H3E2 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC25.21■■□□□ 1.63
SNX25Q9H3E2 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
SNX25Q9H3E2 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
SNX25Q9H3E2 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SNX25Q9H3E2 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SNX25Q9H3E2 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
SNX25Q9H3E2 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
SNX25Q9H3E2 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SNX25Q9H3E2 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC25.2■■□□□ 1.62
SNX25Q9H3E2 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
SNX25Q9H3E2 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SNX25Q9H3E2 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SNX25Q9H3E2 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC25.19■■□□□ 1.62
SNX25Q9H3E2 AL451085.2-201ENST00000605085 799 ntBASIC25.19■■□□□ 1.62
SNX25Q9H3E2 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC25.18■■□□□ 1.62
SNX25Q9H3E2 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SNX25Q9H3E2 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SNX25Q9H3E2 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC25.18■■□□□ 1.62
SNX25Q9H3E2 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.18■■□□□ 1.62
SNX25Q9H3E2 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
SNX25Q9H3E2 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SNX25Q9H3E2 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SNX25Q9H3E2 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC25.17■■□□□ 1.62
SNX25Q9H3E2 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SNX25Q9H3E2 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
SNX25Q9H3E2 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
SNX25Q9H3E2 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC25.17■■□□□ 1.62
SNX25Q9H3E2 THA1P-201ENST00000590384 1145 ntBASIC25.17■■□□□ 1.62
SNX25Q9H3E2 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC25.17■■□□□ 1.62
SNX25Q9H3E2 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC25.16■■□□□ 1.62
SNX25Q9H3E2 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SNX25Q9H3E2 KRT18P24-201ENST00000344739 1156 ntBASIC25.16■■□□□ 1.62
SNX25Q9H3E2 CEBPA-AS1-201ENST00000592982 2198 ntBASIC25.16■■□□□ 1.62
SNX25Q9H3E2 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SNX25Q9H3E2 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SNX25Q9H3E2 AC120024.1-201ENST00000562672 995 ntBASIC25.15■■□□□ 1.62
SNX25Q9H3E2 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SNX25Q9H3E2 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC25.15■■□□□ 1.62
SNX25Q9H3E2 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SNX25Q9H3E2 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SNX25Q9H3E2 TK2-216ENST00000564917 1156 ntTSL 3 BASIC25.14■■□□□ 1.62
SNX25Q9H3E2 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SNX25Q9H3E2 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SNX25Q9H3E2 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SNX25Q9H3E2 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SNX25Q9H3E2 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC25.12■■□□□ 1.61
SNX25Q9H3E2 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC25.12■■□□□ 1.61
SNX25Q9H3E2 PRTG-204ENST00000561292 833 ntTSL 3 BASIC25.12■■□□□ 1.61
SNX25Q9H3E2 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.12■■□□□ 1.61
SNX25Q9H3E2 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
SNX25Q9H3E2 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
SNX25Q9H3E2 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.11■■□□□ 1.61
SNX25Q9H3E2 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SNX25Q9H3E2 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC25.11■■□□□ 1.61
SNX25Q9H3E2 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SNX25Q9H3E2 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
SNX25Q9H3E2 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SNX25Q9H3E2 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SNX25Q9H3E2 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SNX25Q9H3E2 AC009299.2-201ENST00000482477 511 ntBASIC25.1■■□□□ 1.61
SNX25Q9H3E2 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SNX25Q9H3E2 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SNX25Q9H3E2 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
SNX25Q9H3E2 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC25.1■■□□□ 1.61
SNX25Q9H3E2 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SNX25Q9H3E2 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SNX25Q9H3E2 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
SNX25Q9H3E2 AC011551.1-201ENST00000614101 683 ntBASIC25.09■■□□□ 1.61
SNX25Q9H3E2 SLC6A10P-202ENST00000431994 2058 ntBASIC25.09■■□□□ 1.61
SNX25Q9H3E2 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
SNX25Q9H3E2 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC25.09■■□□□ 1.61
SNX25Q9H3E2 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC25.08■■□□□ 1.61
SNX25Q9H3E2 AL035685.1-201ENST00000636663 812 ntBASIC25.08■■□□□ 1.61
SNX25Q9H3E2 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC25.08■■□□□ 1.61
SNX25Q9H3E2 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SNX25Q9H3E2 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SNX25Q9H3E2 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.07■■□□□ 1.6
SNX25Q9H3E2 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SNX25Q9H3E2 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC25.07■■□□□ 1.6
SNX25Q9H3E2 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC25.07■■□□□ 1.6
SNX25Q9H3E2 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC25.07■■□□□ 1.6
SNX25Q9H3E2 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
SNX25Q9H3E2 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SNX25Q9H3E2 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.06■■□□□ 1.6
SNX25Q9H3E2 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
SNX25Q9H3E2 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
SNX25Q9H3E2 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms