Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX3-1Q99801 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX3-1Q99801 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX3-1Q99801 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX3-1Q99801 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX3-1Q99801 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.46■□□□□ 0.87
NKX3-1Q99801 AL157400.5-201ENST00000507624 621 ntBASIC20.46■□□□□ 0.87
NKX3-1Q99801 AC126177.7-201ENST00000547904 679 ntBASIC20.46■□□□□ 0.87
NKX3-1Q99801 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.46■□□□□ 0.87
NKX3-1Q99801 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX3-1Q99801 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX3-1Q99801 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.46■□□□□ 0.87
NKX3-1Q99801 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NKX3-1Q99801 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX3-1Q99801 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX3-1Q99801 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NKX3-1Q99801 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX3-1Q99801 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.45■□□□□ 0.86
NKX3-1Q99801 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX3-1Q99801 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX3-1Q99801 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
NKX3-1Q99801 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
NKX3-1Q99801 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.44■□□□□ 0.86
NKX3-1Q99801 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX3-1Q99801 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.44■□□□□ 0.86
NKX3-1Q99801 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX3-1Q99801 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
NKX3-1Q99801 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.44■□□□□ 0.86
NKX3-1Q99801 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX3-1Q99801 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX3-1Q99801 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
NKX3-1Q99801 AP003733.4-201ENST00000623785 1697 ntBASIC20.43■□□□□ 0.86
NKX3-1Q99801 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NKX3-1Q99801 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NKX3-1Q99801 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.43■□□□□ 0.86
NKX3-1Q99801 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
NKX3-1Q99801 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.42■□□□□ 0.86
NKX3-1Q99801 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.42■□□□□ 0.86
NKX3-1Q99801 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.42■□□□□ 0.86
NKX3-1Q99801 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NKX3-1Q99801 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
NKX3-1Q99801 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.42■□□□□ 0.86
NKX3-1Q99801 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.42■□□□□ 0.86
NKX3-1Q99801 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.42■□□□□ 0.86
NKX3-1Q99801 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NKX3-1Q99801 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX3-1Q99801 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NKX3-1Q99801 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NKX3-1Q99801 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NKX3-1Q99801 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
NKX3-1Q99801 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX3-1Q99801 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
NKX3-1Q99801 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.41■□□□□ 0.86
NKX3-1Q99801 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NKX3-1Q99801 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.4■□□□□ 0.86
NKX3-1Q99801 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NKX3-1Q99801 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
NKX3-1Q99801 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.4■□□□□ 0.86
NKX3-1Q99801 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NKX3-1Q99801 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
NKX3-1Q99801 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.39■□□□□ 0.85
NKX3-1Q99801 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
NKX3-1Q99801 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.39■□□□□ 0.85
NKX3-1Q99801 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX3-1Q99801 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX3-1Q99801 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX3-1Q99801 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
NKX3-1Q99801 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX3-1Q99801 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX3-1Q99801 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NKX3-1Q99801 ABHD17AP3-201ENST00000503096 1137 ntBASIC20.38■□□□□ 0.85
NKX3-1Q99801 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.38■□□□□ 0.85
NKX3-1Q99801 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.38■□□□□ 0.85
NKX3-1Q99801 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
NKX3-1Q99801 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.38■□□□□ 0.85
NKX3-1Q99801 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
NKX3-1Q99801 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NKX3-1Q99801 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NKX3-1Q99801 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX3-1Q99801 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX3-1Q99801 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NKX3-1Q99801 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX3-1Q99801 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX3-1Q99801 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX3-1Q99801 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX3-1Q99801 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.37■□□□□ 0.85
NKX3-1Q99801 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NKX3-1Q99801 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NKX3-1Q99801 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.37■□□□□ 0.85
NKX3-1Q99801 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NKX3-1Q99801 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NKX3-1Q99801 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NKX3-1Q99801 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NKX3-1Q99801 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
NKX3-1Q99801 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NKX3-1Q99801 AC060814.1-201ENST00000554326 538 ntBASIC20.36■□□□□ 0.85
NKX3-1Q99801 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NKX3-1Q99801 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NKX3-1Q99801 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX3-1Q99801 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms