Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF404Q494X3 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF404Q494X3 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
ZNF404Q494X3 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.23■□□□□ 0.99
ZNF404Q494X3 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
ZNF404Q494X3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF404Q494X3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF404Q494X3 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF404Q494X3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.23■□□□□ 0.99
ZNF404Q494X3 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.23■□□□□ 0.99
ZNF404Q494X3 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF404Q494X3 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF404Q494X3 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF404Q494X3 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
ZNF404Q494X3 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.22■□□□□ 0.99
ZNF404Q494X3 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF404Q494X3 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF404Q494X3 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF404Q494X3 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF404Q494X3 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF404Q494X3 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
ZNF404Q494X3 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF404Q494X3 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.22■□□□□ 0.99
ZNF404Q494X3 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF404Q494X3 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF404Q494X3 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF404Q494X3 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF404Q494X3 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF404Q494X3 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
ZNF404Q494X3 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF404Q494X3 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.21■□□□□ 0.99
ZNF404Q494X3 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.21■□□□□ 0.99
ZNF404Q494X3 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF404Q494X3 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.21■□□□□ 0.99
ZNF404Q494X3 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
ZNF404Q494X3 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.21■□□□□ 0.99
ZNF404Q494X3 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.21■□□□□ 0.99
ZNF404Q494X3 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF404Q494X3 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF404Q494X3 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF404Q494X3 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.2■□□□□ 0.98
ZNF404Q494X3 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF404Q494X3 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF404Q494X3 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
ZNF404Q494X3 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
ZNF404Q494X3 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF404Q494X3 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF404Q494X3 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
ZNF404Q494X3 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.19■□□□□ 0.98
ZNF404Q494X3 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF404Q494X3 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF404Q494X3 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF404Q494X3 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF404Q494X3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF404Q494X3 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF404Q494X3 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF404Q494X3 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF404Q494X3 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF404Q494X3 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF404Q494X3 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.17■□□□□ 0.98
ZNF404Q494X3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
ZNF404Q494X3 AC141586.4-201ENST00000624558 1573 ntBASIC21.17■□□□□ 0.98
ZNF404Q494X3 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF404Q494X3 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF404Q494X3 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF404Q494X3 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF404Q494X3 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF404Q494X3 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF404Q494X3 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.16■□□□□ 0.98
ZNF404Q494X3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
ZNF404Q494X3 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF404Q494X3 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
ZNF404Q494X3 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF404Q494X3 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.15■□□□□ 0.98
ZNF404Q494X3 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF404Q494X3 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
ZNF404Q494X3 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF404Q494X3 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.15■□□□□ 0.98
ZNF404Q494X3 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF404Q494X3 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.14■□□□□ 0.98
ZNF404Q494X3 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.14■□□□□ 0.98
ZNF404Q494X3 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
ZNF404Q494X3 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
ZNF404Q494X3 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF404Q494X3 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
ZNF404Q494X3 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
ZNF404Q494X3 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF404Q494X3 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF404Q494X3 AL117328.2-201ENST00000624617 1940 ntBASIC21.14■□□□□ 0.97
ZNF404Q494X3 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF404Q494X3 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF404Q494X3 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF404Q494X3 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.13■□□□□ 0.97
ZNF404Q494X3 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF404Q494X3 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF404Q494X3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF404Q494X3 AC148477.6-201ENST00000623746 465 ntBASIC21.13■□□□□ 0.97
ZNF404Q494X3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF404Q494X3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF404Q494X3 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms