Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
PDLIM1O00151 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.3■■□□□ 1.16
PDLIM1O00151 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PDLIM1O00151 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PDLIM1O00151 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
PDLIM1O00151 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC22.29■■□□□ 1.16
PDLIM1O00151 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PDLIM1O00151 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.29■■□□□ 1.16
PDLIM1O00151 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC22.29■■□□□ 1.16
PDLIM1O00151 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PDLIM1O00151 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PDLIM1O00151 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC22.28■■□□□ 1.16
PDLIM1O00151 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC22.28■■□□□ 1.16
PDLIM1O00151 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC22.28■■□□□ 1.16
PDLIM1O00151 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
PDLIM1O00151 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
PDLIM1O00151 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
PDLIM1O00151 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PDLIM1O00151 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
PDLIM1O00151 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.28■■□□□ 1.16
PDLIM1O00151 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC22.28■■□□□ 1.16
PDLIM1O00151 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PDLIM1O00151 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
PDLIM1O00151 AP003733.4-201ENST00000623785 1697 ntBASIC22.27■■□□□ 1.16
PDLIM1O00151 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
PDLIM1O00151 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PDLIM1O00151 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PDLIM1O00151 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
PDLIM1O00151 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
PDLIM1O00151 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PDLIM1O00151 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC22.26■■□□□ 1.15
PDLIM1O00151 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
PDLIM1O00151 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PDLIM1O00151 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
PDLIM1O00151 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PDLIM1O00151 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
PDLIM1O00151 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PDLIM1O00151 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PDLIM1O00151 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.25■■□□□ 1.15
PDLIM1O00151 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC22.24■■□□□ 1.15
PDLIM1O00151 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PDLIM1O00151 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PDLIM1O00151 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PDLIM1O00151 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC22.24■■□□□ 1.15
PDLIM1O00151 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
PDLIM1O00151 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PDLIM1O00151 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.23■■□□□ 1.15
PDLIM1O00151 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDLIM1O00151 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDLIM1O00151 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDLIM1O00151 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDLIM1O00151 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDLIM1O00151 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDLIM1O00151 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PDLIM1O00151 AC148477.6-201ENST00000623746 465 ntBASIC22.23■■□□□ 1.15
PDLIM1O00151 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
PDLIM1O00151 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PDLIM1O00151 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
PDLIM1O00151 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDLIM1O00151 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDLIM1O00151 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDLIM1O00151 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PDLIM1O00151 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDLIM1O00151 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDLIM1O00151 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDLIM1O00151 SLC25A24-204ENST00000569674 2357 ntBASIC22.22■■□□□ 1.15
PDLIM1O00151 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDLIM1O00151 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDLIM1O00151 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDLIM1O00151 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.22■■□□□ 1.15
PDLIM1O00151 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
PDLIM1O00151 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDLIM1O00151 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
PDLIM1O00151 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
PDLIM1O00151 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
PDLIM1O00151 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
PDLIM1O00151 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PDLIM1O00151 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC22.21■■□□□ 1.15
PDLIM1O00151 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
PDLIM1O00151 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
PDLIM1O00151 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
PDLIM1O00151 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PDLIM1O00151 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
PDLIM1O00151 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
PDLIM1O00151 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.2■■□□□ 1.15
PDLIM1O00151 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
PDLIM1O00151 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PDLIM1O00151 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.2■■□□□ 1.14
PDLIM1O00151 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PDLIM1O00151 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
PDLIM1O00151 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.14
PDLIM1O00151 CHST11-203ENST00000547956 936 ntTSL 2 BASIC22.2■■□□□ 1.14
PDLIM1O00151 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC22.2■■□□□ 1.14
PDLIM1O00151 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PDLIM1O00151 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PDLIM1O00151 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PDLIM1O00151 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.19■■□□□ 1.14
PDLIM1O00151 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PDLIM1O00151 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PDLIM1O00151 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms