Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC27.4■■□□□ 1.98
PCDHA1Q9Y5I3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
PCDHA1Q9Y5I3 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC27.39■■□□□ 1.98
PCDHA1Q9Y5I3 AC022616.5-201ENST00000518796 181 ntBASIC27.39■■□□□ 1.98
PCDHA1Q9Y5I3 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.97
PCDHA1Q9Y5I3 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
PCDHA1Q9Y5I3 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
PCDHA1Q9Y5I3 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
PCDHA1Q9Y5I3 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
PCDHA1Q9Y5I3 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC27.38■■□□□ 1.97
PCDHA1Q9Y5I3 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
PCDHA1Q9Y5I3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC27.37■■□□□ 1.97
PCDHA1Q9Y5I3 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC27.37■■□□□ 1.97
PCDHA1Q9Y5I3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC27.37■■□□□ 1.97
PCDHA1Q9Y5I3 AL031848.2-201ENST00000607670 837 ntBASIC27.37■■□□□ 1.97
PCDHA1Q9Y5I3 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
PCDHA1Q9Y5I3 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
PCDHA1Q9Y5I3 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC27.36■■□□□ 1.97
PCDHA1Q9Y5I3 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
PCDHA1Q9Y5I3 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC27.35■■□□□ 1.97
PCDHA1Q9Y5I3 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC27.35■■□□□ 1.97
PCDHA1Q9Y5I3 AL035685.1-201ENST00000636663 812 ntBASIC27.35■■□□□ 1.97
PCDHA1Q9Y5I3 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC27.35■■□□□ 1.97
PCDHA1Q9Y5I3 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC27.34■■□□□ 1.97
PCDHA1Q9Y5I3 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
PCDHA1Q9Y5I3 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
PCDHA1Q9Y5I3 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
PCDHA1Q9Y5I3 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC27.34■■□□□ 1.97
PCDHA1Q9Y5I3 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC27.34■■□□□ 1.97
PCDHA1Q9Y5I3 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
PCDHA1Q9Y5I3 AC097639.1-201ENST00000565519 1891 ntBASIC27.34■■□□□ 1.97
PCDHA1Q9Y5I3 AC091060.1-201ENST00000623524 1766 ntBASIC27.33■■□□□ 1.97
PCDHA1Q9Y5I3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
PCDHA1Q9Y5I3 AC009299.2-201ENST00000482477 511 ntBASIC27.33■■□□□ 1.97
PCDHA1Q9Y5I3 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC27.33■■□□□ 1.97
PCDHA1Q9Y5I3 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
PCDHA1Q9Y5I3 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
PCDHA1Q9Y5I3 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
PCDHA1Q9Y5I3 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC27.32■■□□□ 1.96
PCDHA1Q9Y5I3 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
PCDHA1Q9Y5I3 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC27.32■■□□□ 1.96
PCDHA1Q9Y5I3 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
PCDHA1Q9Y5I3 AL592295.1-201ENST00000400984 884 ntBASIC27.31■■□□□ 1.96
PCDHA1Q9Y5I3 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC27.31■■□□□ 1.96
PCDHA1Q9Y5I3 PRTG-204ENST00000561292 833 ntTSL 3 BASIC27.31■■□□□ 1.96
PCDHA1Q9Y5I3 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
PCDHA1Q9Y5I3 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC27.31■■□□□ 1.96
PCDHA1Q9Y5I3 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
PCDHA1Q9Y5I3 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC27.31■■□□□ 1.96
PCDHA1Q9Y5I3 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC27.3■■□□□ 1.96
PCDHA1Q9Y5I3 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC27.3■■□□□ 1.96
PCDHA1Q9Y5I3 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
PCDHA1Q9Y5I3 DUSP8P4-201ENST00000399538 1761 ntBASIC27.3■■□□□ 1.96
PCDHA1Q9Y5I3 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
PCDHA1Q9Y5I3 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC27.29■■□□□ 1.96
PCDHA1Q9Y5I3 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC27.29■■□□□ 1.96
PCDHA1Q9Y5I3 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC27.29■■□□□ 1.96
PCDHA1Q9Y5I3 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
PCDHA1Q9Y5I3 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
PCDHA1Q9Y5I3 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC27.28■■□□□ 1.96
PCDHA1Q9Y5I3 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
PCDHA1Q9Y5I3 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC27.28■■□□□ 1.96
PCDHA1Q9Y5I3 TK2-216ENST00000564917 1156 ntTSL 3 BASIC27.28■■□□□ 1.96
PCDHA1Q9Y5I3 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC27.28■■□□□ 1.96
PCDHA1Q9Y5I3 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PCDHA1Q9Y5I3 KRT18P24-201ENST00000344739 1156 ntBASIC27.27■■□□□ 1.96
PCDHA1Q9Y5I3 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PCDHA1Q9Y5I3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
PCDHA1Q9Y5I3 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC27.27■■□□□ 1.96
PCDHA1Q9Y5I3 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
PCDHA1Q9Y5I3 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
PCDHA1Q9Y5I3 AC145676.1-201ENST00000514988 2004 ntBASIC27.26■■□□□ 1.95
PCDHA1Q9Y5I3 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC27.26■■□□□ 1.95
PCDHA1Q9Y5I3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC27.26■■□□□ 1.95
PCDHA1Q9Y5I3 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
PCDHA1Q9Y5I3 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
PCDHA1Q9Y5I3 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
PCDHA1Q9Y5I3 FOXO3B-201ENST00000395675 1928 ntBASIC27.26■■□□□ 1.95
PCDHA1Q9Y5I3 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
PCDHA1Q9Y5I3 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
PCDHA1Q9Y5I3 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
PCDHA1Q9Y5I3 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
PCDHA1Q9Y5I3 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
PCDHA1Q9Y5I3 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
PCDHA1Q9Y5I3 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
PCDHA1Q9Y5I3 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
PCDHA1Q9Y5I3 AC120024.1-201ENST00000562672 995 ntBASIC27.24■■□□□ 1.95
PCDHA1Q9Y5I3 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC27.24■■□□□ 1.95
PCDHA1Q9Y5I3 THA1P-201ENST00000590384 1145 ntBASIC27.24■■□□□ 1.95
PCDHA1Q9Y5I3 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
PCDHA1Q9Y5I3 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
PCDHA1Q9Y5I3 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC27.24■■□□□ 1.95
PCDHA1Q9Y5I3 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
PCDHA1Q9Y5I3 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC27.23■■□□□ 1.95
PCDHA1Q9Y5I3 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC27.23■■□□□ 1.95
PCDHA1Q9Y5I3 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC27.22■■□□□ 1.95
PCDHA1Q9Y5I3 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
PCDHA1Q9Y5I3 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC27.22■■□□□ 1.95
PCDHA1Q9Y5I3 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PCDHA1Q9Y5I3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC27.22■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms