Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.15■■□□□ 1.14
HMGN4O00479 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
HMGN4O00479 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
HMGN4O00479 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGN4O00479 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGN4O00479 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGN4O00479 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.13■■□□□ 1.13
HMGN4O00479 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGN4O00479 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGN4O00479 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC22.13■■□□□ 1.13
HMGN4O00479 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC22.13■■□□□ 1.13
HMGN4O00479 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
HMGN4O00479 GFER-205ENST00000569451 517 ntTSL 5 BASIC22.13■■□□□ 1.13
HMGN4O00479 RAP2CP1-202ENST00000605179 643 ntBASIC22.13■■□□□ 1.13
HMGN4O00479 AP003733.4-201ENST00000623785 1697 ntBASIC22.13■■□□□ 1.13
HMGN4O00479 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
HMGN4O00479 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.13■■□□□ 1.13
HMGN4O00479 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
HMGN4O00479 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGN4O00479 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
HMGN4O00479 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
HMGN4O00479 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.12■■□□□ 1.13
HMGN4O00479 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HMGN4O00479 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC22.11■■□□□ 1.13
HMGN4O00479 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HMGN4O00479 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGN4O00479 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGN4O00479 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGN4O00479 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGN4O00479 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22.1■■□□□ 1.13
HMGN4O00479 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
HMGN4O00479 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGN4O00479 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.1■■□□□ 1.13
HMGN4O00479 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HMGN4O00479 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGN4O00479 AC026202.3-201ENST00000600805 1127 ntBASIC22.09■■□□□ 1.13
HMGN4O00479 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGN4O00479 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.09■■□□□ 1.13
HMGN4O00479 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
HMGN4O00479 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGN4O00479 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGN4O00479 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGN4O00479 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.08■■□□□ 1.13
HMGN4O00479 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.08■■□□□ 1.12
HMGN4O00479 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
HMGN4O00479 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
HMGN4O00479 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
HMGN4O00479 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
HMGN4O00479 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.07■■□□□ 1.12
HMGN4O00479 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
HMGN4O00479 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
HMGN4O00479 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.06■■□□□ 1.12
HMGN4O00479 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.06■■□□□ 1.12
HMGN4O00479 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
HMGN4O00479 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
HMGN4O00479 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.05■■□□□ 1.12
HMGN4O00479 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
HMGN4O00479 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
HMGN4O00479 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGN4O00479 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
HMGN4O00479 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGN4O00479 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.04■■□□□ 1.12
HMGN4O00479 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGN4O00479 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
HMGN4O00479 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
HMGN4O00479 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
HMGN4O00479 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGN4O00479 LINC01124-201ENST00000409786 2117 ntBASIC22.03■■□□□ 1.12
HMGN4O00479 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
HMGN4O00479 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGN4O00479 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.03■■□□□ 1.12
HMGN4O00479 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGN4O00479 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGN4O00479 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGN4O00479 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGN4O00479 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGN4O00479 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGN4O00479 ABHD17AP3-201ENST00000503096 1137 ntBASIC22.02■■□□□ 1.12
HMGN4O00479 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.02■■□□□ 1.12
HMGN4O00479 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.02■■□□□ 1.11
HMGN4O00479 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGN4O00479 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.01■■□□□ 1.11
HMGN4O00479 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGN4O00479 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGN4O00479 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGN4O00479 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGN4O00479 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGN4O00479 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HMGN4O00479 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HMGN4O00479 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC22.01■■□□□ 1.11
HMGN4O00479 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGN4O00479 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HMGN4O00479 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGN4O00479 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22■■□□□ 1.11
HMGN4O00479 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC22■■□□□ 1.11
HMGN4O00479 AC009831.1-201ENST00000580420 1582 ntBASIC22■■□□□ 1.11
HMGN4O00479 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
HMGN4O00479 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGN4O00479 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGN4O00479 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms