Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
NKX6-3A6NJ46 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
NKX6-3A6NJ46 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX6-3A6NJ46 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX6-3A6NJ46 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX6-3A6NJ46 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX6-3A6NJ46 AC004987.1-201ENST00000428627 508 ntBASIC19.89■□□□□ 0.77
NKX6-3A6NJ46 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.89■□□□□ 0.77
NKX6-3A6NJ46 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.89■□□□□ 0.77
NKX6-3A6NJ46 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX6-3A6NJ46 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
NKX6-3A6NJ46 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NKX6-3A6NJ46 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC19.88■□□□□ 0.77
NKX6-3A6NJ46 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC19.88■□□□□ 0.77
NKX6-3A6NJ46 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX6-3A6NJ46 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX6-3A6NJ46 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.88■□□□□ 0.77
NKX6-3A6NJ46 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX6-3A6NJ46 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX6-3A6NJ46 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.88■□□□□ 0.77
NKX6-3A6NJ46 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX6-3A6NJ46 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
NKX6-3A6NJ46 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.87■□□□□ 0.77
NKX6-3A6NJ46 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.87■□□□□ 0.77
NKX6-3A6NJ46 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NKX6-3A6NJ46 BHLHE23-202ENST00000612929 1109 ntBASIC19.87■□□□□ 0.77
NKX6-3A6NJ46 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.87■□□□□ 0.77
NKX6-3A6NJ46 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NKX6-3A6NJ46 SHF-207ENST00000560540 2062 ntTSL 5 BASIC19.87■□□□□ 0.77
NKX6-3A6NJ46 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX6-3A6NJ46 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
NKX6-3A6NJ46 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
NKX6-3A6NJ46 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX6-3A6NJ46 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX6-3A6NJ46 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX6-3A6NJ46 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX6-3A6NJ46 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX6-3A6NJ46 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NKX6-3A6NJ46 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC19.86■□□□□ 0.77
NKX6-3A6NJ46 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NKX6-3A6NJ46 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NKX6-3A6NJ46 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NKX6-3A6NJ46 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NKX6-3A6NJ46 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.85■□□□□ 0.77
NKX6-3A6NJ46 AC087393.1-201ENST00000582896 145 ntBASIC19.85■□□□□ 0.77
NKX6-3A6NJ46 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NKX6-3A6NJ46 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
NKX6-3A6NJ46 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NKX6-3A6NJ46 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.85■□□□□ 0.77
NKX6-3A6NJ46 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NKX6-3A6NJ46 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
NKX6-3A6NJ46 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NKX6-3A6NJ46 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NKX6-3A6NJ46 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.84■□□□□ 0.77
NKX6-3A6NJ46 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NKX6-3A6NJ46 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NKX6-3A6NJ46 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.84■□□□□ 0.77
NKX6-3A6NJ46 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NKX6-3A6NJ46 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
NKX6-3A6NJ46 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
NKX6-3A6NJ46 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NKX6-3A6NJ46 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
NKX6-3A6NJ46 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.83■□□□□ 0.77
NKX6-3A6NJ46 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NKX6-3A6NJ46 AL033527.3-201ENST00000566366 1196 ntBASIC19.83■□□□□ 0.77
NKX6-3A6NJ46 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
NKX6-3A6NJ46 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.83■□□□□ 0.76
NKX6-3A6NJ46 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
NKX6-3A6NJ46 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
NKX6-3A6NJ46 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
NKX6-3A6NJ46 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NKX6-3A6NJ46 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX6-3A6NJ46 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
NKX6-3A6NJ46 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX6-3A6NJ46 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX6-3A6NJ46 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.82■□□□□ 0.76
NKX6-3A6NJ46 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.82■□□□□ 0.76
NKX6-3A6NJ46 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX6-3A6NJ46 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NKX6-3A6NJ46 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX6-3A6NJ46 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX6-3A6NJ46 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX6-3A6NJ46 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.81■□□□□ 0.76
NKX6-3A6NJ46 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NKX6-3A6NJ46 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NKX6-3A6NJ46 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NKX6-3A6NJ46 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.81■□□□□ 0.76
NKX6-3A6NJ46 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NKX6-3A6NJ46 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
NKX6-3A6NJ46 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NKX6-3A6NJ46 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NKX6-3A6NJ46 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.8■□□□□ 0.76
NKX6-3A6NJ46 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.8■□□□□ 0.76
NKX6-3A6NJ46 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.8■□□□□ 0.76
NKX6-3A6NJ46 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.8■□□□□ 0.76
NKX6-3A6NJ46 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NKX6-3A6NJ46 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX6-3A6NJ46 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.79■□□□□ 0.76
NKX6-3A6NJ46 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.79■□□□□ 0.76
NKX6-3A6NJ46 AC074183.2-201ENST00000623112 922 ntBASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms