Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC45.97■■■■■ 4.95
SHROOM4Q9ULL8 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC45.97■■■■■ 4.95
SHROOM4Q9ULL8 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC45.97■■■■■ 4.95
SHROOM4Q9ULL8 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC45.97■■■■■ 4.95
SHROOM4Q9ULL8 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC45.97■■■■■ 4.95
SHROOM4Q9ULL8 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC45.97■■■■■ 4.95
SHROOM4Q9ULL8 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC45.96■■■■■ 4.95
SHROOM4Q9ULL8 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC45.96■■■■■ 4.95
SHROOM4Q9ULL8 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC45.96■■■■■ 4.95
SHROOM4Q9ULL8 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC45.96■■■■■ 4.95
SHROOM4Q9ULL8 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC45.96■■■■■ 4.95
SHROOM4Q9ULL8 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC45.95■■■■■ 4.95
SHROOM4Q9ULL8 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC45.95■■■■■ 4.95
SHROOM4Q9ULL8 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC45.94■■■■■ 4.95
SHROOM4Q9ULL8 BX255925.1-201ENST00000566954 1854 ntBASIC45.94■■■■■ 4.95
SHROOM4Q9ULL8 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC45.94■■■■■ 4.94
SHROOM4Q9ULL8 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC45.94■■■■■ 4.94
SHROOM4Q9ULL8 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC45.94■■■■■ 4.94
SHROOM4Q9ULL8 AC133561.4-201ENST00000566112 224 ntBASIC45.93■■■■■ 4.94
SHROOM4Q9ULL8 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC45.93■■■■■ 4.94
SHROOM4Q9ULL8 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC45.93■■■■■ 4.94
SHROOM4Q9ULL8 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC45.93■■■■■ 4.94
SHROOM4Q9ULL8 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC45.92■■■■■ 4.94
SHROOM4Q9ULL8 KRT18P24-201ENST00000344739 1156 ntBASIC45.92■■■■■ 4.94
SHROOM4Q9ULL8 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC45.92■■■■■ 4.94
SHROOM4Q9ULL8 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC45.92■■■■■ 4.94
SHROOM4Q9ULL8 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC45.92■■■■■ 4.94
SHROOM4Q9ULL8 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC45.91■■■■■ 4.94
SHROOM4Q9ULL8 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC45.91■■■■■ 4.94
SHROOM4Q9ULL8 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC45.91■■■■■ 4.94
SHROOM4Q9ULL8 AL136116.3-201ENST00000402907 1138 ntBASIC45.91■■■■■ 4.94
SHROOM4Q9ULL8 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC45.91■■■■■ 4.94
SHROOM4Q9ULL8 AL117332.1-201ENST00000622628 974 ntBASIC45.91■■■■■ 4.94
SHROOM4Q9ULL8 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC45.9■■■■■ 4.94
SHROOM4Q9ULL8 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC45.9■■■■■ 4.94
SHROOM4Q9ULL8 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC45.9■■■■■ 4.94
SHROOM4Q9ULL8 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC45.89■■■■■ 4.94
SHROOM4Q9ULL8 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC45.89■■■■■ 4.94
SHROOM4Q9ULL8 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC45.89■■■■■ 4.94
SHROOM4Q9ULL8 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC45.89■■■■■ 4.94
SHROOM4Q9ULL8 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC45.89■■■■■ 4.94
SHROOM4Q9ULL8 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC45.89■■■■■ 4.94
SHROOM4Q9ULL8 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC45.89■■■■■ 4.94
SHROOM4Q9ULL8 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC45.88■■■■■ 4.94
SHROOM4Q9ULL8 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC45.88■■■■■ 4.94
SHROOM4Q9ULL8 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC45.87■■■■■ 4.93
SHROOM4Q9ULL8 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC45.87■■■■■ 4.93
SHROOM4Q9ULL8 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC45.86■■■■■ 4.93
SHROOM4Q9ULL8 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC45.86■■■■■ 4.93
SHROOM4Q9ULL8 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC45.86■■■■■ 4.93
SHROOM4Q9ULL8 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC45.85■■■■■ 4.93
SHROOM4Q9ULL8 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC45.85■■■■■ 4.93
SHROOM4Q9ULL8 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC45.85■■■■■ 4.93
SHROOM4Q9ULL8 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC45.85■■■■■ 4.93
SHROOM4Q9ULL8 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC45.85■■■■■ 4.93
SHROOM4Q9ULL8 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC45.85■■■■■ 4.93
SHROOM4Q9ULL8 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC45.84■■■■■ 4.93
SHROOM4Q9ULL8 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC45.84■■■■■ 4.93
SHROOM4Q9ULL8 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC45.83■■■■■ 4.93
SHROOM4Q9ULL8 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC45.83■■■■■ 4.93
SHROOM4Q9ULL8 SRR-208ENST00000576848 588 ntTSL 4 BASIC45.83■■■■■ 4.93
SHROOM4Q9ULL8 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC45.83■■■■■ 4.93
SHROOM4Q9ULL8 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC45.83■■■■■ 4.93
SHROOM4Q9ULL8 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC45.82■■■■■ 4.93
SHROOM4Q9ULL8 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC45.82■■■■■ 4.93
SHROOM4Q9ULL8 GUK1-205ENST00000366722 850 ntTSL 3 BASIC45.82■■■■■ 4.93
SHROOM4Q9ULL8 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC45.82■■■■■ 4.93
SHROOM4Q9ULL8 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC45.82■■■■■ 4.93
SHROOM4Q9ULL8 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC45.82■■■■■ 4.93
SHROOM4Q9ULL8 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC45.82■■■■■ 4.93
SHROOM4Q9ULL8 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC45.81■■■■■ 4.92
SHROOM4Q9ULL8 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC45.81■■■■■ 4.92
SHROOM4Q9ULL8 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC45.81■■■■■ 4.92
SHROOM4Q9ULL8 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC45.81■■■■■ 4.92
SHROOM4Q9ULL8 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC45.8■■■■■ 4.92
SHROOM4Q9ULL8 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC45.8■■■■■ 4.92
SHROOM4Q9ULL8 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC45.8■■■■■ 4.92
SHROOM4Q9ULL8 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC45.79■■■■■ 4.92
SHROOM4Q9ULL8 AC005837.3-201ENST00000612163 286 ntBASIC45.79■■■■■ 4.92
SHROOM4Q9ULL8 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC45.78■■■■■ 4.92
SHROOM4Q9ULL8 MIR3621-201ENST00000580529 85 ntBASIC45.77■■■■■ 4.92
SHROOM4Q9ULL8 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC45.76■■■■■ 4.92
SHROOM4Q9ULL8 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC45.76■■■■■ 4.92
SHROOM4Q9ULL8 TSPY9P-201ENST00000440215 945 ntBASIC45.76■■■■■ 4.92
SHROOM4Q9ULL8 TSPY11P-201ENST00000442607 1045 ntBASIC45.76■■■■■ 4.92
SHROOM4Q9ULL8 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC45.76■■■■■ 4.92
SHROOM4Q9ULL8 AC142086.6-201ENST00000621154 1765 ntBASIC45.76■■■■■ 4.92
SHROOM4Q9ULL8 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC45.75■■■■■ 4.91
SHROOM4Q9ULL8 AC142472.1-201ENST00000612013 1741 ntBASIC45.75■■■■■ 4.91
SHROOM4Q9ULL8 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC45.74■■■■■ 4.91
SHROOM4Q9ULL8 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC45.74■■■■■ 4.91
SHROOM4Q9ULL8 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC45.74■■■■■ 4.91
SHROOM4Q9ULL8 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC45.74■■■■■ 4.91
SHROOM4Q9ULL8 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC45.74■■■■■ 4.91
SHROOM4Q9ULL8 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC45.74■■■■■ 4.91
SHROOM4Q9ULL8 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC45.73■■■■■ 4.91
SHROOM4Q9ULL8 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC45.73■■■■■ 4.91
SHROOM4Q9ULL8 AC092028.1-203ENST00000608262 953 ntBASIC45.73■■■■■ 4.91
SHROOM4Q9ULL8 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC45.72■■■■■ 4.91
SHROOM4Q9ULL8 AC026271.2-201ENST00000428091 497 ntBASIC45.72■■■■■ 4.91
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms