Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC16.5■□□□□ 0.23
ALMS1Q8TCU4 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
ALMS1Q8TCU4 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
ALMS1Q8TCU4 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ALMS1Q8TCU4 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ALMS1Q8TCU4 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ALMS1Q8TCU4 AL139393.2-201ENST00000608721 2025 ntBASIC16.49■□□□□ 0.23
ALMS1Q8TCU4 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ALMS1Q8TCU4 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ALMS1Q8TCU4 AC011551.1-201ENST00000614101 683 ntBASIC16.49■□□□□ 0.23
ALMS1Q8TCU4 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
ALMS1Q8TCU4 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ALMS1Q8TCU4 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC16.49■□□□□ 0.23
ALMS1Q8TCU4 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ALMS1Q8TCU4 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ALMS1Q8TCU4 PLD4-205ENST00000553861 667 ntTSL 2 BASIC16.48■□□□□ 0.23
ALMS1Q8TCU4 AC142381.2-201ENST00000566120 298 ntBASIC16.48■□□□□ 0.23
ALMS1Q8TCU4 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ALMS1Q8TCU4 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ALMS1Q8TCU4 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ALMS1Q8TCU4 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC16.48■□□□□ 0.23
ALMS1Q8TCU4 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ALMS1Q8TCU4 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC16.48■□□□□ 0.23
ALMS1Q8TCU4 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
ALMS1Q8TCU4 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC16.48■□□□□ 0.23
ALMS1Q8TCU4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC16.48■□□□□ 0.23
ALMS1Q8TCU4 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC16.48■□□□□ 0.23
ALMS1Q8TCU4 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
ALMS1Q8TCU4 AC106739.1-201ENST00000617035 715 ntBASIC16.47■□□□□ 0.23
ALMS1Q8TCU4 MIR6821-201ENST00000617625 74 ntBASIC16.47■□□□□ 0.23
ALMS1Q8TCU4 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC16.47■□□□□ 0.23
ALMS1Q8TCU4 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
ALMS1Q8TCU4 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
ALMS1Q8TCU4 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
ALMS1Q8TCU4 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ALMS1Q8TCU4 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
ALMS1Q8TCU4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC16.46■□□□□ 0.23
ALMS1Q8TCU4 AF131216.4-201ENST00000638924 1588 ntBASIC16.45■□□□□ 0.22
ALMS1Q8TCU4 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ALMS1Q8TCU4 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ALMS1Q8TCU4 AL356740.2-201ENST00000601559 647 ntBASIC16.45■□□□□ 0.22
ALMS1Q8TCU4 ANKRD20A6P-201ENST00000618763 204 ntBASIC16.45■□□□□ 0.22
ALMS1Q8TCU4 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC16.45■□□□□ 0.22
ALMS1Q8TCU4 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ALMS1Q8TCU4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ALMS1Q8TCU4 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC16.45■□□□□ 0.22
ALMS1Q8TCU4 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
ALMS1Q8TCU4 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
ALMS1Q8TCU4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
ALMS1Q8TCU4 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
ALMS1Q8TCU4 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC16.44■□□□□ 0.22
ALMS1Q8TCU4 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC16.44■□□□□ 0.22
ALMS1Q8TCU4 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ALMS1Q8TCU4 UNC93B3-201ENST00000308076 687 ntBASIC16.44■□□□□ 0.22
ALMS1Q8TCU4 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ALMS1Q8TCU4 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC16.44■□□□□ 0.22
ALMS1Q8TCU4 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC16.43■□□□□ 0.22
ALMS1Q8TCU4 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ALMS1Q8TCU4 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ALMS1Q8TCU4 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ALMS1Q8TCU4 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ALMS1Q8TCU4 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
ALMS1Q8TCU4 CD72-202ENST00000378430 585 ntTSL 3 BASIC16.43■□□□□ 0.22
ALMS1Q8TCU4 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC16.43■□□□□ 0.22
ALMS1Q8TCU4 AC087623.3-201ENST00000607047 1098 ntBASIC16.43■□□□□ 0.22
ALMS1Q8TCU4 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC16.43■□□□□ 0.22
ALMS1Q8TCU4 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ALMS1Q8TCU4 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ALMS1Q8TCU4 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ALMS1Q8TCU4 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ALMS1Q8TCU4 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ALMS1Q8TCU4 AC105265.2-201ENST00000467189 838 ntBASIC16.42■□□□□ 0.22
ALMS1Q8TCU4 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
ALMS1Q8TCU4 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ALMS1Q8TCU4 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC16.42■□□□□ 0.22
ALMS1Q8TCU4 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ALMS1Q8TCU4 TFPT-201ENST00000391757 774 ntTSL 5 BASIC16.41■□□□□ 0.22
ALMS1Q8TCU4 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ALMS1Q8TCU4 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC16.41■□□□□ 0.22
ALMS1Q8TCU4 AC024257.2-201ENST00000549699 147 ntBASIC16.41■□□□□ 0.22
ALMS1Q8TCU4 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
ALMS1Q8TCU4 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ALMS1Q8TCU4 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ALMS1Q8TCU4 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC16.4■□□□□ 0.22
ALMS1Q8TCU4 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC16.4■□□□□ 0.22
ALMS1Q8TCU4 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
ALMS1Q8TCU4 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ALMS1Q8TCU4 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ALMS1Q8TCU4 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ALMS1Q8TCU4 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC16.4■□□□□ 0.22
ALMS1Q8TCU4 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ALMS1Q8TCU4 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC16.4■□□□□ 0.22
ALMS1Q8TCU4 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC16.4■□□□□ 0.22
ALMS1Q8TCU4 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC16.4■□□□□ 0.22
ALMS1Q8TCU4 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC16.39■□□□□ 0.22
ALMS1Q8TCU4 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ALMS1Q8TCU4 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC16.39■□□□□ 0.21
ALMS1Q8TCU4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC16.39■□□□□ 0.21
ALMS1Q8TCU4 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ALMS1Q8TCU4 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms