Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
PDLIM3Q53GG5 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
PDLIM3Q53GG5 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PDLIM3Q53GG5 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PDLIM3Q53GG5 AC093323.1-202ENST00000635031 2045 ntBASIC19.54■□□□□ 0.72
PDLIM3Q53GG5 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.54■□□□□ 0.72
PDLIM3Q53GG5 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PDLIM3Q53GG5 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
PDLIM3Q53GG5 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PDLIM3Q53GG5 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PDLIM3Q53GG5 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.54■□□□□ 0.72
PDLIM3Q53GG5 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PDLIM3Q53GG5 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC19.54■□□□□ 0.72
PDLIM3Q53GG5 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PDLIM3Q53GG5 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PDLIM3Q53GG5 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PDLIM3Q53GG5 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
PDLIM3Q53GG5 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM3Q53GG5 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM3Q53GG5 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM3Q53GG5 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC19.53■□□□□ 0.72
PDLIM3Q53GG5 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM3Q53GG5 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM3Q53GG5 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM3Q53GG5 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC19.53■□□□□ 0.72
PDLIM3Q53GG5 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM3Q53GG5 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM3Q53GG5 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM3Q53GG5 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.53■□□□□ 0.72
PDLIM3Q53GG5 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PDLIM3Q53GG5 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
PDLIM3Q53GG5 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.52■□□□□ 0.72
PDLIM3Q53GG5 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.52■□□□□ 0.72
PDLIM3Q53GG5 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PDLIM3Q53GG5 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
PDLIM3Q53GG5 ERN1-208ENST00000606895 2068 ntBASIC19.52■□□□□ 0.71
PDLIM3Q53GG5 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.51■□□□□ 0.71
PDLIM3Q53GG5 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.51■□□□□ 0.71
PDLIM3Q53GG5 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PDLIM3Q53GG5 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PDLIM3Q53GG5 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
PDLIM3Q53GG5 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PDLIM3Q53GG5 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PDLIM3Q53GG5 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PDLIM3Q53GG5 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PDLIM3Q53GG5 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PDLIM3Q53GG5 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.5■□□□□ 0.71
PDLIM3Q53GG5 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.5■□□□□ 0.71
PDLIM3Q53GG5 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.5■□□□□ 0.71
PDLIM3Q53GG5 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.5■□□□□ 0.71
PDLIM3Q53GG5 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PDLIM3Q53GG5 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PDLIM3Q53GG5 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.5■□□□□ 0.71
PDLIM3Q53GG5 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PDLIM3Q53GG5 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PDLIM3Q53GG5 AC142381.3-201ENST00000568208 1670 ntBASIC19.49■□□□□ 0.71
PDLIM3Q53GG5 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PDLIM3Q53GG5 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PDLIM3Q53GG5 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC19.49■□□□□ 0.71
PDLIM3Q53GG5 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
PDLIM3Q53GG5 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.49■□□□□ 0.71
PDLIM3Q53GG5 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM3Q53GG5 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM3Q53GG5 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
PDLIM3Q53GG5 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
PDLIM3Q53GG5 THA1P-201ENST00000590384 1145 ntBASIC19.48■□□□□ 0.71
PDLIM3Q53GG5 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.48■□□□□ 0.71
PDLIM3Q53GG5 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM3Q53GG5 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM3Q53GG5 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC19.48■□□□□ 0.71
PDLIM3Q53GG5 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.48■□□□□ 0.71
PDLIM3Q53GG5 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM3Q53GG5 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
PDLIM3Q53GG5 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM3Q53GG5 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM3Q53GG5 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM3Q53GG5 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM3Q53GG5 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC19.47■□□□□ 0.71
PDLIM3Q53GG5 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.47■□□□□ 0.71
PDLIM3Q53GG5 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM3Q53GG5 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM3Q53GG5 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM3Q53GG5 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM3Q53GG5 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM3Q53GG5 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM3Q53GG5 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
PDLIM3Q53GG5 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM3Q53GG5 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM3Q53GG5 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM3Q53GG5 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM3Q53GG5 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM3Q53GG5 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms