Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC32.3■■■□□ 2.76
RXRBP28702 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC32.3■■■□□ 2.76
RXRBP28702 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC32.3■■■□□ 2.76
RXRBP28702 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
RXRBP28702 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
RXRBP28702 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
RXRBP28702 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC32.29■■■□□ 2.76
RXRBP28702 STOX2-205ENST00000513034 807 ntTSL 3 BASIC32.29■■■□□ 2.76
RXRBP28702 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC32.28■■■□□ 2.76
RXRBP28702 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
RXRBP28702 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC32.28■■■□□ 2.76
RXRBP28702 AF213884.3-201ENST00000563833 479 ntBASIC32.28■■■□□ 2.76
RXRBP28702 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
RXRBP28702 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
RXRBP28702 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC32.26■■■□□ 2.76
RXRBP28702 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC32.26■■■□□ 2.75
RXRBP28702 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC32.26■■■□□ 2.75
RXRBP28702 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
RXRBP28702 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
RXRBP28702 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
RXRBP28702 CD72-202ENST00000378430 585 ntTSL 3 BASIC32.25■■■□□ 2.75
RXRBP28702 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
RXRBP28702 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC32.25■■■□□ 2.75
RXRBP28702 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC32.24■■■□□ 2.75
RXRBP28702 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC32.24■■■□□ 2.75
RXRBP28702 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
RXRBP28702 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
RXRBP28702 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC32.24■■■□□ 2.75
RXRBP28702 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
RXRBP28702 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC32.23■■■□□ 2.75
RXRBP28702 GRAMD4P4-201ENST00000613563 1115 ntBASIC32.23■■■□□ 2.75
RXRBP28702 MIR939-201ENST00000401314 82 ntBASIC32.22■■■□□ 2.75
RXRBP28702 DENND3-207ENST00000518347 850 ntTSL 2 BASIC32.22■■■□□ 2.75
RXRBP28702 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC32.22■■■□□ 2.75
RXRBP28702 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC32.21■■■□□ 2.75
RXRBP28702 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC32.21■■■□□ 2.75
RXRBP28702 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC32.21■■■□□ 2.75
RXRBP28702 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC32.2■■■□□ 2.75
RXRBP28702 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC32.2■■■□□ 2.75
RXRBP28702 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC32.2■■■□□ 2.75
RXRBP28702 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC32.2■■■□□ 2.75
RXRBP28702 CLTA-210ENST00000540080 989 ntTSL 2 BASIC32.2■■■□□ 2.75
RXRBP28702 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC32.2■■■□□ 2.75
RXRBP28702 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
RXRBP28702 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC32.2■■■□□ 2.74
RXRBP28702 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
RXRBP28702 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC32.19■■■□□ 2.74
RXRBP28702 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
RXRBP28702 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC32.19■■■□□ 2.74
RXRBP28702 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC32.19■■■□□ 2.74
RXRBP28702 IKBKGP1-201ENST00000612193 1073 ntBASIC32.19■■■□□ 2.74
RXRBP28702 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC32.19■■■□□ 2.74
RXRBP28702 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC32.19■■■□□ 2.74
RXRBP28702 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
RXRBP28702 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC32.18■■■□□ 2.74
RXRBP28702 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
RXRBP28702 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC32.18■■■□□ 2.74
RXRBP28702 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC32.18■■■□□ 2.74
RXRBP28702 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
RXRBP28702 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC32.18■■■□□ 2.74
RXRBP28702 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC32.17■■■□□ 2.74
RXRBP28702 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
RXRBP28702 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC32.16■■■□□ 2.74
RXRBP28702 TFPT-201ENST00000391757 774 ntTSL 5 BASIC32.16■■■□□ 2.74
RXRBP28702 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC32.16■■■□□ 2.74
RXRBP28702 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC32.16■■■□□ 2.74
RXRBP28702 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC32.16■■■□□ 2.74
RXRBP28702 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC32.16■■■□□ 2.74
RXRBP28702 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC32.16■■■□□ 2.74
RXRBP28702 ID1-201ENST00000376105 1233 ntBASIC32.15■■■□□ 2.74
RXRBP28702 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC32.15■■■□□ 2.74
RXRBP28702 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
RXRBP28702 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC32.15■■■□□ 2.74
RXRBP28702 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
RXRBP28702 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
RXRBP28702 AP001330.3-201ENST00000520123 633 ntBASIC32.13■■■□□ 2.73
RXRBP28702 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
RXRBP28702 AC091305.1-201ENST00000479476 895 ntBASIC32.12■■■□□ 2.73
RXRBP28702 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC32.11■■■□□ 2.73
RXRBP28702 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
RXRBP28702 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC32.11■■■□□ 2.73
RXRBP28702 AL137784.2-201ENST00000607332 1000 ntBASIC32.11■■■□□ 2.73
RXRBP28702 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
RXRBP28702 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
RXRBP28702 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC32.1■■■□□ 2.73
RXRBP28702 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC32.1■■■□□ 2.73
RXRBP28702 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
RXRBP28702 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC32.09■■■□□ 2.73
RXRBP28702 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC32.09■■■□□ 2.73
RXRBP28702 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
RXRBP28702 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC32.09■■■□□ 2.73
RXRBP28702 AC022517.1-201ENST00000592429 346 ntBASIC32.09■■■□□ 2.73
RXRBP28702 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
RXRBP28702 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC32.09■■■□□ 2.73
RXRBP28702 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC32.08■■■□□ 2.73
RXRBP28702 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC32.08■■■□□ 2.73
RXRBP28702 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC32.08■■■□□ 2.73
RXRBP28702 ESRRAP2-201ENST00000418437 1549 ntBASIC32.07■■■□□ 2.72
RXRBP28702 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
RXRBP28702 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC32.07■■■□□ 2.72
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms