Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC22.99■■□□□ 1.27
LSM1O15116 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
LSM1O15116 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.99■■□□□ 1.27
LSM1O15116 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
LSM1O15116 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
LSM1O15116 PREB-202ENST00000406567 1910 ntTSL 5 BASIC22.98■■□□□ 1.27
LSM1O15116 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.98■■□□□ 1.27
LSM1O15116 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
LSM1O15116 AC025884.2-201ENST00000553429 711 ntBASIC22.98■■□□□ 1.27
LSM1O15116 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
LSM1O15116 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
LSM1O15116 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
LSM1O15116 AC060814.1-201ENST00000554326 538 ntBASIC22.97■■□□□ 1.27
LSM1O15116 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
LSM1O15116 MOB2-207ENST00000614710 705 ntTSL 5 BASIC22.97■■□□□ 1.27
LSM1O15116 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.97■■□□□ 1.27
LSM1O15116 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC22.96■■□□□ 1.27
LSM1O15116 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.96■■□□□ 1.27
LSM1O15116 PFN2-211ENST00000489155 636 ntTSL 4 BASIC22.96■■□□□ 1.27
LSM1O15116 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC22.96■■□□□ 1.27
LSM1O15116 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.96■■□□□ 1.27
LSM1O15116 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
LSM1O15116 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
LSM1O15116 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
LSM1O15116 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
LSM1O15116 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
LSM1O15116 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
LSM1O15116 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
LSM1O15116 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
LSM1O15116 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC22.95■■□□□ 1.26
LSM1O15116 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
LSM1O15116 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
LSM1O15116 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
LSM1O15116 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
LSM1O15116 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
LSM1O15116 SLC6A10P-202ENST00000431994 2058 ntBASIC22.94■■□□□ 1.26
LSM1O15116 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
LSM1O15116 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
LSM1O15116 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC22.94■■□□□ 1.26
LSM1O15116 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
LSM1O15116 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
LSM1O15116 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
LSM1O15116 MIR7108-201ENST00000614319 87 ntBASIC22.93■■□□□ 1.26
LSM1O15116 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.93■■□□□ 1.26
LSM1O15116 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
LSM1O15116 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
LSM1O15116 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
LSM1O15116 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC22.93■■□□□ 1.26
LSM1O15116 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
LSM1O15116 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.92■■□□□ 1.26
LSM1O15116 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
LSM1O15116 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
LSM1O15116 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
LSM1O15116 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
LSM1O15116 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
LSM1O15116 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
LSM1O15116 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC22.91■■□□□ 1.26
LSM1O15116 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
LSM1O15116 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
LSM1O15116 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
LSM1O15116 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
LSM1O15116 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
LSM1O15116 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.9■■□□□ 1.26
LSM1O15116 MIR3960-201ENST00000583311 91 ntBASIC22.9■■□□□ 1.26
LSM1O15116 AC092296.2-201ENST00000589470 999 ntBASIC22.9■■□□□ 1.26
LSM1O15116 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC22.9■■□□□ 1.26
LSM1O15116 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
LSM1O15116 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
LSM1O15116 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
LSM1O15116 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.89■■□□□ 1.26
LSM1O15116 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
LSM1O15116 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
LSM1O15116 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
LSM1O15116 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
LSM1O15116 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC22.88■■□□□ 1.25
LSM1O15116 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.88■■□□□ 1.25
LSM1O15116 SMPD5-203ENST00000639008 1464 ntBASIC22.88■■□□□ 1.25
LSM1O15116 MIR639-201ENST00000384974 98 ntBASIC22.88■■□□□ 1.25
LSM1O15116 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
LSM1O15116 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.88■■□□□ 1.25
LSM1O15116 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
LSM1O15116 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
LSM1O15116 AP003733.4-201ENST00000623785 1697 ntBASIC22.87■■□□□ 1.25
LSM1O15116 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.87■■□□□ 1.25
LSM1O15116 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.87■■□□□ 1.25
LSM1O15116 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC22.87■■□□□ 1.25
LSM1O15116 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.87■■□□□ 1.25
LSM1O15116 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
LSM1O15116 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LSM1O15116 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LSM1O15116 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LSM1O15116 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
LSM1O15116 RPS2-202ENST00000526522 924 ntTSL 2 BASIC22.86■■□□□ 1.25
LSM1O15116 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC22.86■■□□□ 1.25
LSM1O15116 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC22.86■■□□□ 1.25
LSM1O15116 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LSM1O15116 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
LSM1O15116 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LSM1O15116 TPT1-202ENST00000379055 948 ntTSL 2 BASIC22.85■■□□□ 1.25
LSM1O15116 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.85■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms