Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.94■■□□□ 1.1
COL6A6A6NMZ7 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.94■■□□□ 1.1
COL6A6A6NMZ7 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.94■■□□□ 1.1
COL6A6A6NMZ7 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL6A6A6NMZ7 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC21.93■■□□□ 1.1
COL6A6A6NMZ7 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.93■■□□□ 1.1
COL6A6A6NMZ7 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.93■■□□□ 1.1
COL6A6A6NMZ7 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL6A6A6NMZ7 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL6A6A6NMZ7 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A6A6NMZ7 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A6A6NMZ7 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
COL6A6A6NMZ7 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.92■■□□□ 1.1
COL6A6A6NMZ7 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
COL6A6A6NMZ7 AC105265.2-201ENST00000467189 838 ntBASIC21.92■■□□□ 1.1
COL6A6A6NMZ7 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A6A6NMZ7 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.92■■□□□ 1.1
COL6A6A6NMZ7 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.91■■□□□ 1.1
COL6A6A6NMZ7 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.91■■□□□ 1.1
COL6A6A6NMZ7 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL6A6A6NMZ7 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL6A6A6NMZ7 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
COL6A6A6NMZ7 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL6A6A6NMZ7 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL6A6A6NMZ7 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.91■■□□□ 1.1
COL6A6A6NMZ7 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL6A6A6NMZ7 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.91■■□□□ 1.1
COL6A6A6NMZ7 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL6A6A6NMZ7 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL6A6A6NMZ7 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL6A6A6NMZ7 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL6A6A6NMZ7 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL6A6A6NMZ7 AP002414.2-202ENST00000590929 1450 ntBASIC21.9■■□□□ 1.1
COL6A6A6NMZ7 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
COL6A6A6NMZ7 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.89■■□□□ 1.09
COL6A6A6NMZ7 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.89■■□□□ 1.09
COL6A6A6NMZ7 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC21.89■■□□□ 1.09
COL6A6A6NMZ7 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL6A6A6NMZ7 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL6A6A6NMZ7 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.89■■□□□ 1.09
COL6A6A6NMZ7 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.89■■□□□ 1.09
COL6A6A6NMZ7 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.89■■□□□ 1.09
COL6A6A6NMZ7 AF213884.3-201ENST00000563833 479 ntBASIC21.88■■□□□ 1.09
COL6A6A6NMZ7 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL6A6A6NMZ7 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.87■■□□□ 1.09
COL6A6A6NMZ7 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.87■■□□□ 1.09
COL6A6A6NMZ7 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.87■■□□□ 1.09
COL6A6A6NMZ7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.87■■□□□ 1.09
COL6A6A6NMZ7 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.86■■□□□ 1.09
COL6A6A6NMZ7 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL6A6A6NMZ7 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
COL6A6A6NMZ7 AL355001.2-201ENST00000620617 1191 ntBASIC21.86■■□□□ 1.09
COL6A6A6NMZ7 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21.85■■□□□ 1.09
COL6A6A6NMZ7 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.85■■□□□ 1.09
COL6A6A6NMZ7 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL6A6A6NMZ7 AL139393.2-201ENST00000608721 2025 ntBASIC21.85■■□□□ 1.09
COL6A6A6NMZ7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.85■■□□□ 1.09
COL6A6A6NMZ7 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL6A6A6NMZ7 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL6A6A6NMZ7 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL6A6A6NMZ7 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL6A6A6NMZ7 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.83■■□□□ 1.09
COL6A6A6NMZ7 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
COL6A6A6NMZ7 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
COL6A6A6NMZ7 AC024257.2-201ENST00000549699 147 ntBASIC21.82■■□□□ 1.08
COL6A6A6NMZ7 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.82■■□□□ 1.08
COL6A6A6NMZ7 RARRES2P11-201ENST00000635158 484 ntBASIC21.82■■□□□ 1.08
COL6A6A6NMZ7 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL6A6A6NMZ7 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL6A6A6NMZ7 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
COL6A6A6NMZ7 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
COL6A6A6NMZ7 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL6A6A6NMZ7 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.81■■□□□ 1.08
COL6A6A6NMZ7 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.81■■□□□ 1.08
COL6A6A6NMZ7 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.81■■□□□ 1.08
COL6A6A6NMZ7 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
COL6A6A6NMZ7 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL6A6A6NMZ7 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL6A6A6NMZ7 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.81■■□□□ 1.08
COL6A6A6NMZ7 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL6A6A6NMZ7 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.8■■□□□ 1.08
COL6A6A6NMZ7 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL6A6A6NMZ7 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.8■■□□□ 1.08
COL6A6A6NMZ7 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.8■■□□□ 1.08
COL6A6A6NMZ7 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL6A6A6NMZ7 UNC93B3-201ENST00000308076 687 ntBASIC21.8■■□□□ 1.08
COL6A6A6NMZ7 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL6A6A6NMZ7 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
COL6A6A6NMZ7 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL6A6A6NMZ7 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL6A6A6NMZ7 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.78■■□□□ 1.08
COL6A6A6NMZ7 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL6A6A6NMZ7 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.78■■□□□ 1.08
COL6A6A6NMZ7 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.78■■□□□ 1.08
COL6A6A6NMZ7 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL6A6A6NMZ7 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
COL6A6A6NMZ7 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL6A6A6NMZ7 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL6A6A6NMZ7 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL6A6A6NMZ7 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms