Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC32.04■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 ECEL1P2-201ENST00000461596 1295 ntBASIC32.04■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC32.04■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC32.03■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC32.03■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC32.03■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC32.03■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC32.03■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC32.03■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC32.02■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC32.01■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC32.01■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC32.01■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC32.01■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC32■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC32■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 AC093536.1-201ENST00000569153 554 ntBASIC32■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC32■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC32■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC32■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC31.99■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC31.98■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC31.97■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 AC007029.1-201ENST00000604183 313 ntBASIC31.96■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.96■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC31.96■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC31.96■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC31.95■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC31.95■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 PFN2-211ENST00000489155 636 ntTSL 4 BASIC31.95■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC31.95■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
SENP3-EIF4A1A0A087X0R7 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC31.95■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 PKM-204ENST00000449901 2526 ntTSL 2 BASIC31.94■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC31.94■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC31.94■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC31.93■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC31.92■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC31.92■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC31.92■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC31.92■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 RP9P-202ENST00000450133 1212 ntBASIC31.91■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC31.9■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC31.9■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 MIR3960-201ENST00000583311 91 ntBASIC31.89■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC31.89■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 AC009831.1-201ENST00000580420 1582 ntBASIC31.89■■■□□ 2.7
SENP3-EIF4A1A0A087X0R7 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC31.88■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC31.88■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC31.88■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 AC026202.3-201ENST00000600805 1127 ntBASIC31.88■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC31.88■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms