Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX3-1Q99801 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.8■□□□□ 0.92
NKX3-1Q99801 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.8■□□□□ 0.92
NKX3-1Q99801 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NKX3-1Q99801 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX3-1Q99801 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX3-1Q99801 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX3-1Q99801 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.8■□□□□ 0.92
NKX3-1Q99801 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX3-1Q99801 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX3-1Q99801 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
NKX3-1Q99801 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX3-1Q99801 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.79■□□□□ 0.92
NKX3-1Q99801 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX3-1Q99801 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX3-1Q99801 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
NKX3-1Q99801 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX3-1Q99801 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX3-1Q99801 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NKX3-1Q99801 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.78■□□□□ 0.92
NKX3-1Q99801 AL139125.2-201ENST00000623134 1869 ntBASIC20.78■□□□□ 0.92
NKX3-1Q99801 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX3-1Q99801 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.78■□□□□ 0.92
NKX3-1Q99801 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.78■□□□□ 0.92
NKX3-1Q99801 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NKX3-1Q99801 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NKX3-1Q99801 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.78■□□□□ 0.92
NKX3-1Q99801 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX3-1Q99801 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NKX3-1Q99801 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX3-1Q99801 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.77■□□□□ 0.92
NKX3-1Q99801 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NKX3-1Q99801 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.77■□□□□ 0.92
NKX3-1Q99801 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NKX3-1Q99801 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.77■□□□□ 0.92
NKX3-1Q99801 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
NKX3-1Q99801 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.77■□□□□ 0.91
NKX3-1Q99801 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NKX3-1Q99801 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
NKX3-1Q99801 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NKX3-1Q99801 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NKX3-1Q99801 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NKX3-1Q99801 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NKX3-1Q99801 AC148477.6-201ENST00000623746 465 ntBASIC20.76■□□□□ 0.91
NKX3-1Q99801 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
NKX3-1Q99801 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.76■□□□□ 0.91
NKX3-1Q99801 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NKX3-1Q99801 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.76■□□□□ 0.91
NKX3-1Q99801 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NKX3-1Q99801 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX3-1Q99801 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX3-1Q99801 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.75■□□□□ 0.91
NKX3-1Q99801 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.75■□□□□ 0.91
NKX3-1Q99801 AC008813.1-201ENST00000536597 885 ntBASIC20.75■□□□□ 0.91
NKX3-1Q99801 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX3-1Q99801 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NKX3-1Q99801 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.74■□□□□ 0.91
NKX3-1Q99801 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NKX3-1Q99801 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.74■□□□□ 0.91
NKX3-1Q99801 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.74■□□□□ 0.91
NKX3-1Q99801 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.74■□□□□ 0.91
NKX3-1Q99801 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.74■□□□□ 0.91
NKX3-1Q99801 AC016575.1-201ENST00000607026 382 ntBASIC20.74■□□□□ 0.91
NKX3-1Q99801 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.74■□□□□ 0.91
NKX3-1Q99801 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.74■□□□□ 0.91
NKX3-1Q99801 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NKX3-1Q99801 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
NKX3-1Q99801 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NKX3-1Q99801 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NKX3-1Q99801 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
NKX3-1Q99801 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.73■□□□□ 0.91
NKX3-1Q99801 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NKX3-1Q99801 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NKX3-1Q99801 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NKX3-1Q99801 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NKX3-1Q99801 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
NKX3-1Q99801 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX3-1Q99801 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NKX3-1Q99801 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX3-1Q99801 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.72■□□□□ 0.91
NKX3-1Q99801 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX3-1Q99801 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX3-1Q99801 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX3-1Q99801 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NKX3-1Q99801 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX3-1Q99801 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX3-1Q99801 MIR3648-2-201ENST00000581792 180 ntBASIC20.71■□□□□ 0.91
NKX3-1Q99801 MIR3648-1-201ENST00000615959 180 ntBASIC20.71■□□□□ 0.91
NKX3-1Q99801 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX3-1Q99801 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX3-1Q99801 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.7■□□□□ 0.91
NKX3-1Q99801 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
NKX3-1Q99801 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX3-1Q99801 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX3-1Q99801 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX3-1Q99801 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX3-1Q99801 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.7■□□□□ 0.9
NKX3-1Q99801 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX3-1Q99801 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.7■□□□□ 0.9
NKX3-1Q99801 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms