Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 BX255925.1-201ENST00000566954 1854 ntBASIC28.17■■■□□ 2.1
HMGCS2P54868 KRT18P10-201ENST00000388836 1287 ntBASIC28.17■■■□□ 2.1
HMGCS2P54868 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC28.17■■■□□ 2.1
HMGCS2P54868 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
HMGCS2P54868 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
HMGCS2P54868 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
HMGCS2P54868 AC022616.5-201ENST00000518796 181 ntBASIC28.16■■■□□ 2.1
HMGCS2P54868 GRAMD4P7-201ENST00000578182 1232 ntBASIC28.15■■■□□ 2.1
HMGCS2P54868 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC28.15■■■□□ 2.1
HMGCS2P54868 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
HMGCS2P54868 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
HMGCS2P54868 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
HMGCS2P54868 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
HMGCS2P54868 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC28.14■■■□□ 2.1
HMGCS2P54868 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC28.14■■■□□ 2.1
HMGCS2P54868 KRT125P-201ENST00000546827 989 ntBASIC28.14■■■□□ 2.1
HMGCS2P54868 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC28.14■■■□□ 2.1
HMGCS2P54868 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC28.13■■■□□ 2.09
HMGCS2P54868 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
HMGCS2P54868 MIR4787-201ENST00000607364 84 ntBASIC28.13■■■□□ 2.09
HMGCS2P54868 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC28.13■■■□□ 2.09
HMGCS2P54868 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC28.13■■■□□ 2.09
HMGCS2P54868 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.09
HMGCS2P54868 BX664725.1-201ENST00000438252 379 ntBASIC28.12■■■□□ 2.09
HMGCS2P54868 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC28.12■■■□□ 2.09
HMGCS2P54868 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.09
HMGCS2P54868 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
HMGCS2P54868 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
HMGCS2P54868 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC28.11■■■□□ 2.09
HMGCS2P54868 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
HMGCS2P54868 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC28.11■■■□□ 2.09
HMGCS2P54868 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
HMGCS2P54868 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
HMGCS2P54868 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
HMGCS2P54868 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
HMGCS2P54868 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
HMGCS2P54868 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC28.1■■■□□ 2.09
HMGCS2P54868 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
HMGCS2P54868 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC28.09■■■□□ 2.09
HMGCS2P54868 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
HMGCS2P54868 KRT18P24-201ENST00000344739 1156 ntBASIC28.09■■■□□ 2.09
HMGCS2P54868 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC28.09■■■□□ 2.09
HMGCS2P54868 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
HMGCS2P54868 AC142472.1-201ENST00000612013 1741 ntBASIC28.09■■■□□ 2.09
HMGCS2P54868 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
HMGCS2P54868 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
HMGCS2P54868 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
HMGCS2P54868 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC28.08■■■□□ 2.09
HMGCS2P54868 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.08
HMGCS2P54868 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC28.07■■■□□ 2.08
HMGCS2P54868 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC28.07■■■□□ 2.08
HMGCS2P54868 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC28.07■■■□□ 2.08
HMGCS2P54868 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
HMGCS2P54868 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
HMGCS2P54868 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC28.06■■■□□ 2.08
HMGCS2P54868 UNC93B8-201ENST00000511903 705 ntBASIC28.06■■■□□ 2.08
HMGCS2P54868 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
HMGCS2P54868 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC28.06■■■□□ 2.08
HMGCS2P54868 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
HMGCS2P54868 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC28.05■■■□□ 2.08
HMGCS2P54868 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC28.05■■■□□ 2.08
HMGCS2P54868 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC28.04■■■□□ 2.08
HMGCS2P54868 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
HMGCS2P54868 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
HMGCS2P54868 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC28.04■■■□□ 2.08
HMGCS2P54868 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC28.03■■■□□ 2.08
HMGCS2P54868 AC008406.3-201ENST00000620001 1374 ntBASIC28.03■■■□□ 2.08
HMGCS2P54868 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
HMGCS2P54868 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
HMGCS2P54868 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
HMGCS2P54868 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC28.02■■■□□ 2.08
HMGCS2P54868 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.02■■■□□ 2.08
HMGCS2P54868 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
HMGCS2P54868 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC28.02■■■□□ 2.08
HMGCS2P54868 AC120024.1-201ENST00000562672 995 ntBASIC28.02■■■□□ 2.08
HMGCS2P54868 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC28.02■■■□□ 2.08
HMGCS2P54868 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC28.02■■■□□ 2.08
HMGCS2P54868 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC28.02■■■□□ 2.08
HMGCS2P54868 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.08
HMGCS2P54868 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC28.01■■■□□ 2.07
HMGCS2P54868 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
HMGCS2P54868 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
HMGCS2P54868 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC28.01■■■□□ 2.07
HMGCS2P54868 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.07
HMGCS2P54868 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC28.01■■■□□ 2.07
HMGCS2P54868 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC28.01■■■□□ 2.07
HMGCS2P54868 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
HMGCS2P54868 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
HMGCS2P54868 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC28.01■■■□□ 2.07
HMGCS2P54868 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
HMGCS2P54868 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC28.01■■■□□ 2.07
HMGCS2P54868 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC28■■■□□ 2.07
HMGCS2P54868 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC28■■■□□ 2.07
HMGCS2P54868 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC28■■■□□ 2.07
HMGCS2P54868 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
HMGCS2P54868 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC28■■■□□ 2.07
HMGCS2P54868 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC28■■■□□ 2.07
HMGCS2P54868 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC28■■■□□ 2.07
HMGCS2P54868 KRT16P3-201ENST00000439127 1283 ntBASIC27.99■■■□□ 2.07
HMGCS2P54868 AC137630.3-201ENST00000607245 391 ntBASIC27.99■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms