Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC32.56■■■□□ 2.8
RXRBP28702 AC105265.2-201ENST00000467189 838 ntBASIC32.56■■■□□ 2.8
RXRBP28702 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC32.56■■■□□ 2.8
RXRBP28702 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC32.56■■■□□ 2.8
RXRBP28702 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
RXRBP28702 RARRES2P11-201ENST00000635158 484 ntBASIC32.56■■■□□ 2.8
RXRBP28702 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC32.55■■■□□ 2.8
RXRBP28702 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
RXRBP28702 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC32.54■■■□□ 2.8
RXRBP28702 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
RXRBP28702 UNC93B3-201ENST00000308076 687 ntBASIC32.54■■■□□ 2.8
RXRBP28702 AC087623.3-201ENST00000607047 1098 ntBASIC32.54■■■□□ 2.8
RXRBP28702 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC32.54■■■□□ 2.8
RXRBP28702 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC32.54■■■□□ 2.8
RXRBP28702 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC32.53■■■□□ 2.8
RXRBP28702 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC32.53■■■□□ 2.8
RXRBP28702 RASSF1-AS1-201ENST00000629828 790 ntBASIC32.53■■■□□ 2.8
RXRBP28702 EXOG-217ENST00000630638 197 ntTSL 5 BASIC32.53■■■□□ 2.8
RXRBP28702 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
RXRBP28702 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
RXRBP28702 AC100797.4-201ENST00000631653 1827 ntBASIC32.52■■■□□ 2.8
RXRBP28702 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC32.52■■■□□ 2.8
RXRBP28702 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
RXRBP28702 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC32.51■■■□□ 2.8
RXRBP28702 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
RXRBP28702 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC32.51■■■□□ 2.79
RXRBP28702 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC32.51■■■□□ 2.79
RXRBP28702 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
RXRBP28702 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC32.5■■■□□ 2.79
RXRBP28702 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC32.5■■■□□ 2.79
RXRBP28702 AL136162.1-201ENST00000607711 1078 ntBASIC32.5■■■□□ 2.79
RXRBP28702 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC32.49■■■□□ 2.79
RXRBP28702 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC32.49■■■□□ 2.79
RXRBP28702 AL355001.2-201ENST00000620617 1191 ntBASIC32.49■■■□□ 2.79
RXRBP28702 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
RXRBP28702 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
RXRBP28702 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
RXRBP28702 WHAMMP3-201ENST00000611636 1609 ntBASIC32.48■■■□□ 2.79
RXRBP28702 EDA-201ENST00000338901 1233 ntBASIC32.48■■■□□ 2.79
RXRBP28702 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC32.48■■■□□ 2.79
RXRBP28702 PLD4-205ENST00000553861 667 ntTSL 2 BASIC32.47■■■□□ 2.79
RXRBP28702 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC32.46■■■□□ 2.79
RXRBP28702 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
RXRBP28702 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC32.46■■■□□ 2.79
RXRBP28702 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
RXRBP28702 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC32.45■■■□□ 2.79
RXRBP28702 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
RXRBP28702 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC32.45■■■□□ 2.78
RXRBP28702 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
RXRBP28702 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC32.44■■■□□ 2.78
RXRBP28702 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC32.43■■■□□ 2.78
RXRBP28702 AP004833.2-201ENST00000532228 1454 ntBASIC32.43■■■□□ 2.78
RXRBP28702 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC32.43■■■□□ 2.78
RXRBP28702 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
RXRBP28702 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC32.43■■■□□ 2.78
RXRBP28702 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC32.43■■■□□ 2.78
RXRBP28702 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
RXRBP28702 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC32.43■■■□□ 2.78
RXRBP28702 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
RXRBP28702 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC32.42■■■□□ 2.78
RXRBP28702 RBM38-205ENST00000440234 686 ntTSL 2 BASIC32.42■■■□□ 2.78
RXRBP28702 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
RXRBP28702 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC32.42■■■□□ 2.78
RXRBP28702 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC32.41■■■□□ 2.78
RXRBP28702 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC32.41■■■□□ 2.78
RXRBP28702 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC32.41■■■□□ 2.78
RXRBP28702 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC32.41■■■□□ 2.78
RXRBP28702 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC32.41■■■□□ 2.78
RXRBP28702 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC32.41■■■□□ 2.78
RXRBP28702 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC32.4■■■□□ 2.78
RXRBP28702 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC32.4■■■□□ 2.78
RXRBP28702 KRT18P10-201ENST00000388836 1287 ntBASIC32.4■■■□□ 2.78
RXRBP28702 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC32.4■■■□□ 2.78
RXRBP28702 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
RXRBP28702 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
RXRBP28702 MIR4281-201ENST00000580852 62 ntBASIC32.4■■■□□ 2.78
RXRBP28702 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC32.4■■■□□ 2.78
RXRBP28702 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
RXRBP28702 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
RXRBP28702 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
RXRBP28702 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC32.37■■■□□ 2.77
RXRBP28702 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
RXRBP28702 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC32.37■■■□□ 2.77
RXRBP28702 AL136967.2-201ENST00000623968 743 ntBASIC32.37■■■□□ 2.77
RXRBP28702 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC32.37■■■□□ 2.77
RXRBP28702 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC32.37■■■□□ 2.77
RXRBP28702 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC32.36■■■□□ 2.77
RXRBP28702 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC32.36■■■□□ 2.77
RXRBP28702 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC32.36■■■□□ 2.77
RXRBP28702 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC32.36■■■□□ 2.77
RXRBP28702 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC32.36■■■□□ 2.77
RXRBP28702 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC32.35■■■□□ 2.77
RXRBP28702 SENP5-202ENST00000419026 973 ntTSL 3 BASIC32.35■■■□□ 2.77
RXRBP28702 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
RXRBP28702 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC32.33■■■□□ 2.77
RXRBP28702 AC024257.2-201ENST00000549699 147 ntBASIC32.33■■■□□ 2.77
RXRBP28702 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
RXRBP28702 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
RXRBP28702 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC32.32■■■□□ 2.76
RXRBP28702 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms