Protein–RNA interactions for Protein: O95716

RAB3D, Ras-related protein Rab-3D, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3DO95716 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
RAB3DO95716 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
RAB3DO95716 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RAB3DO95716 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RAB3DO95716 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RAB3DO95716 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RAB3DO95716 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.32■□□□□ 0.84
RAB3DO95716 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RAB3DO95716 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RAB3DO95716 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RAB3DO95716 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
RAB3DO95716 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RAB3DO95716 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.31■□□□□ 0.84
RAB3DO95716 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
RAB3DO95716 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.31■□□□□ 0.84
RAB3DO95716 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
RAB3DO95716 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
RAB3DO95716 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RAB3DO95716 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.31■□□□□ 0.84
RAB3DO95716 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RAB3DO95716 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RAB3DO95716 AP003733.4-201ENST00000623785 1697 ntBASIC20.31■□□□□ 0.84
RAB3DO95716 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RAB3DO95716 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RAB3DO95716 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
RAB3DO95716 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RAB3DO95716 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.3■□□□□ 0.84
RAB3DO95716 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RAB3DO95716 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RAB3DO95716 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RAB3DO95716 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RAB3DO95716 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RAB3DO95716 HNRNPLP2-201ENST00000568980 1570 ntBASIC20.29■□□□□ 0.84
RAB3DO95716 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RAB3DO95716 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RAB3DO95716 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RAB3DO95716 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RAB3DO95716 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RAB3DO95716 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RAB3DO95716 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RAB3DO95716 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RAB3DO95716 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAB3DO95716 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.28■□□□□ 0.84
RAB3DO95716 AC097639.1-201ENST00000565519 1891 ntBASIC20.28■□□□□ 0.84
RAB3DO95716 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
RAB3DO95716 AC068473.5-201ENST00000616428 2072 ntBASIC20.28■□□□□ 0.84
RAB3DO95716 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAB3DO95716 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.84
RAB3DO95716 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAB3DO95716 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAB3DO95716 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAB3DO95716 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RAB3DO95716 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.27■□□□□ 0.84
RAB3DO95716 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.27■□□□□ 0.84
RAB3DO95716 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RAB3DO95716 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAB3DO95716 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAB3DO95716 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.26■□□□□ 0.83
RAB3DO95716 SUZ12P1-203ENST00000578195 985 ntBASIC20.26■□□□□ 0.83
RAB3DO95716 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RAB3DO95716 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.26■□□□□ 0.83
RAB3DO95716 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAB3DO95716 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RAB3DO95716 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAB3DO95716 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAB3DO95716 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAB3DO95716 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAB3DO95716 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
RAB3DO95716 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.24■□□□□ 0.83
RAB3DO95716 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RAB3DO95716 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RAB3DO95716 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RAB3DO95716 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RAB3DO95716 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
RAB3DO95716 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RAB3DO95716 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RAB3DO95716 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.23■□□□□ 0.83
RAB3DO95716 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RAB3DO95716 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
RAB3DO95716 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RAB3DO95716 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.23■□□□□ 0.83
RAB3DO95716 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
RAB3DO95716 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
RAB3DO95716 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RAB3DO95716 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RAB3DO95716 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.22■□□□□ 0.83
RAB3DO95716 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.22■□□□□ 0.83
RAB3DO95716 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RAB3DO95716 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RAB3DO95716 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.22■□□□□ 0.83
RAB3DO95716 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RAB3DO95716 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RAB3DO95716 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RAB3DO95716 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
RAB3DO95716 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RAB3DO95716 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.21■□□□□ 0.83
RAB3DO95716 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
RAB3DO95716 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RAB3DO95716 LINC00543-201ENST00000567234 1845 ntBASIC20.2■□□□□ 0.82
RAB3DO95716 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms