Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
LMX1BO60663 AC060814.1-201ENST00000554326 538 ntBASIC21.06■□□□□ 0.96
LMX1BO60663 U85056.1-201ENST00000616429 682 ntBASIC21.06■□□□□ 0.96
LMX1BO60663 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LMX1BO60663 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
LMX1BO60663 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LMX1BO60663 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LMX1BO60663 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LMX1BO60663 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
LMX1BO60663 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LMX1BO60663 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LMX1BO60663 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LMX1BO60663 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.05■□□□□ 0.96
LMX1BO60663 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
LMX1BO60663 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
LMX1BO60663 AL359504.2-201ENST00000605506 1601 ntBASIC21.04■□□□□ 0.96
LMX1BO60663 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
LMX1BO60663 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LMX1BO60663 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
LMX1BO60663 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.04■□□□□ 0.96
LMX1BO60663 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LMX1BO60663 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.04■□□□□ 0.96
LMX1BO60663 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LMX1BO60663 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LMX1BO60663 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
LMX1BO60663 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LMX1BO60663 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
LMX1BO60663 AC096887.2-201ENST00000623443 1957 ntBASIC21.03■□□□□ 0.96
LMX1BO60663 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
LMX1BO60663 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
LMX1BO60663 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.03■□□□□ 0.96
LMX1BO60663 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LMX1BO60663 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.02■□□□□ 0.96
LMX1BO60663 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LMX1BO60663 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
LMX1BO60663 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.02■□□□□ 0.96
LMX1BO60663 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LMX1BO60663 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
LMX1BO60663 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.01■□□□□ 0.95
LMX1BO60663 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.01■□□□□ 0.95
LMX1BO60663 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LMX1BO60663 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.01■□□□□ 0.95
LMX1BO60663 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LMX1BO60663 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21■□□□□ 0.95
LMX1BO60663 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21■□□□□ 0.95
LMX1BO60663 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LMX1BO60663 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LMX1BO60663 AC093323.1-202ENST00000635031 2045 ntBASIC20.99■□□□□ 0.95
LMX1BO60663 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LMX1BO60663 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LMX1BO60663 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LMX1BO60663 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LMX1BO60663 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LMX1BO60663 TSPY13P-201ENST00000338964 914 ntBASIC20.98■□□□□ 0.95
LMX1BO60663 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.98■□□□□ 0.95
LMX1BO60663 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
LMX1BO60663 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
LMX1BO60663 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.97■□□□□ 0.95
LMX1BO60663 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LMX1BO60663 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LMX1BO60663 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LMX1BO60663 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LMX1BO60663 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.97■□□□□ 0.95
LMX1BO60663 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LMX1BO60663 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.97■□□□□ 0.95
LMX1BO60663 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LMX1BO60663 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LMX1BO60663 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.96■□□□□ 0.95
LMX1BO60663 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LMX1BO60663 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.96■□□□□ 0.95
LMX1BO60663 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
LMX1BO60663 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LMX1BO60663 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
LMX1BO60663 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LMX1BO60663 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LMX1BO60663 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
LMX1BO60663 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
LMX1BO60663 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.94■□□□□ 0.94
LMX1BO60663 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LMX1BO60663 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LMX1BO60663 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.94■□□□□ 0.94
LMX1BO60663 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LMX1BO60663 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LMX1BO60663 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LMX1BO60663 AC004987.1-201ENST00000428627 508 ntBASIC20.93■□□□□ 0.94
LMX1BO60663 ATP5G2P3-201ENST00000429083 425 ntBASIC20.93■□□□□ 0.94
LMX1BO60663 ECEL1P2-201ENST00000461596 1295 ntBASIC20.93■□□□□ 0.94
LMX1BO60663 AC126177.7-201ENST00000547904 679 ntBASIC20.93■□□□□ 0.94
LMX1BO60663 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC20.93■□□□□ 0.94
LMX1BO60663 AC092296.2-201ENST00000589470 999 ntBASIC20.93■□□□□ 0.94
LMX1BO60663 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LMX1BO60663 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LMX1BO60663 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LMX1BO60663 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LMX1BO60663 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.92■□□□□ 0.94
LMX1BO60663 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
LMX1BO60663 AC138932.3-201ENST00000567634 1902 ntBASIC20.92■□□□□ 0.94
LMX1BO60663 AC022211.4-201ENST00000625094 2161 ntBASIC20.92■□□□□ 0.94
LMX1BO60663 KRT18P60-201ENST00000312876 1297 ntBASIC20.92■□□□□ 0.94
LMX1BO60663 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms