Protein–RNA interactions for Protein: Q8WWV3

RTN4IP1, Reticulon-4-interacting protein 1, mitochondrial, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4IP1Q8WWV3 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTN4IP1Q8WWV3 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.2■□□□□ 0.82
RTN4IP1Q8WWV3 MIR219A2-201ENST00000608502 1504 ntBASIC20.2■□□□□ 0.82
RTN4IP1Q8WWV3 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
RTN4IP1Q8WWV3 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTN4IP1Q8WWV3 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.2■□□□□ 0.82
RTN4IP1Q8WWV3 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RTN4IP1Q8WWV3 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RTN4IP1Q8WWV3 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
RTN4IP1Q8WWV3 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RTN4IP1Q8WWV3 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTN4IP1Q8WWV3 AC142381.3-201ENST00000568208 1670 ntBASIC20.19■□□□□ 0.82
RTN4IP1Q8WWV3 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RTN4IP1Q8WWV3 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTN4IP1Q8WWV3 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTN4IP1Q8WWV3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTN4IP1Q8WWV3 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTN4IP1Q8WWV3 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RTN4IP1Q8WWV3 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.17■□□□□ 0.82
RTN4IP1Q8WWV3 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.17■□□□□ 0.82
RTN4IP1Q8WWV3 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTN4IP1Q8WWV3 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
RTN4IP1Q8WWV3 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
RTN4IP1Q8WWV3 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTN4IP1Q8WWV3 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
RTN4IP1Q8WWV3 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTN4IP1Q8WWV3 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.16■□□□□ 0.82
RTN4IP1Q8WWV3 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTN4IP1Q8WWV3 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.16■□□□□ 0.82
RTN4IP1Q8WWV3 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RTN4IP1Q8WWV3 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.16■□□□□ 0.82
RTN4IP1Q8WWV3 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTN4IP1Q8WWV3 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTN4IP1Q8WWV3 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTN4IP1Q8WWV3 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC20.16■□□□□ 0.82
RTN4IP1Q8WWV3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RTN4IP1Q8WWV3 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RTN4IP1Q8WWV3 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.15■□□□□ 0.82
RTN4IP1Q8WWV3 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.15■□□□□ 0.82
RTN4IP1Q8WWV3 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RTN4IP1Q8WWV3 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTN4IP1Q8WWV3 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTN4IP1Q8WWV3 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTN4IP1Q8WWV3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RTN4IP1Q8WWV3 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTN4IP1Q8WWV3 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RTN4IP1Q8WWV3 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
RTN4IP1Q8WWV3 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTN4IP1Q8WWV3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.14■□□□□ 0.81
RTN4IP1Q8WWV3 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
RTN4IP1Q8WWV3 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RTN4IP1Q8WWV3 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.14■□□□□ 0.81
RTN4IP1Q8WWV3 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RTN4IP1Q8WWV3 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.14■□□□□ 0.81
RTN4IP1Q8WWV3 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.13■□□□□ 0.81
RTN4IP1Q8WWV3 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTN4IP1Q8WWV3 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTN4IP1Q8WWV3 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTN4IP1Q8WWV3 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
RTN4IP1Q8WWV3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
RTN4IP1Q8WWV3 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RTN4IP1Q8WWV3 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RTN4IP1Q8WWV3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RTN4IP1Q8WWV3 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RTN4IP1Q8WWV3 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RTN4IP1Q8WWV3 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RTN4IP1Q8WWV3 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RTN4IP1Q8WWV3 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RTN4IP1Q8WWV3 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RTN4IP1Q8WWV3 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RTN4IP1Q8WWV3 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.11■□□□□ 0.81
RTN4IP1Q8WWV3 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RTN4IP1Q8WWV3 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RTN4IP1Q8WWV3 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RTN4IP1Q8WWV3 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RTN4IP1Q8WWV3 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RTN4IP1Q8WWV3 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
RTN4IP1Q8WWV3 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RTN4IP1Q8WWV3 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RTN4IP1Q8WWV3 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RTN4IP1Q8WWV3 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
RTN4IP1Q8WWV3 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RTN4IP1Q8WWV3 AC022211.4-201ENST00000625094 2161 ntBASIC20.1■□□□□ 0.81
RTN4IP1Q8WWV3 MIR639-201ENST00000384974 98 ntBASIC20.1■□□□□ 0.81
RTN4IP1Q8WWV3 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RTN4IP1Q8WWV3 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.1■□□□□ 0.81
RTN4IP1Q8WWV3 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RTN4IP1Q8WWV3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RTN4IP1Q8WWV3 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RTN4IP1Q8WWV3 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
RTN4IP1Q8WWV3 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RTN4IP1Q8WWV3 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.09■□□□□ 0.81
RTN4IP1Q8WWV3 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.09■□□□□ 0.81
RTN4IP1Q8WWV3 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
RTN4IP1Q8WWV3 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RTN4IP1Q8WWV3 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.08■□□□□ 0.81
RTN4IP1Q8WWV3 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.08■□□□□ 0.81
RTN4IP1Q8WWV3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
RTN4IP1Q8WWV3 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RTN4IP1Q8WWV3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms