Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC28.36■■■□□ 2.13
HMGCS2P54868 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC28.36■■■□□ 2.13
HMGCS2P54868 AL356441.2-201ENST00000443009 864 ntBASIC28.36■■■□□ 2.13
HMGCS2P54868 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC28.36■■■□□ 2.13
HMGCS2P54868 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC28.36■■■□□ 2.13
HMGCS2P54868 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
HMGCS2P54868 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
HMGCS2P54868 AC239859.2-201ENST00000444165 318 ntBASIC28.35■■■□□ 2.13
HMGCS2P54868 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC28.35■■■□□ 2.13
HMGCS2P54868 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
HMGCS2P54868 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC28.34■■■□□ 2.13
HMGCS2P54868 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC28.34■■■□□ 2.13
HMGCS2P54868 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
HMGCS2P54868 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC28.34■■■□□ 2.13
HMGCS2P54868 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
HMGCS2P54868 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
HMGCS2P54868 TK2-216ENST00000564917 1156 ntTSL 3 BASIC28.33■■■□□ 2.13
HMGCS2P54868 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
HMGCS2P54868 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
HMGCS2P54868 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC28.32■■■□□ 2.12
HMGCS2P54868 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
HMGCS2P54868 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC28.32■■■□□ 2.12
HMGCS2P54868 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
HMGCS2P54868 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
HMGCS2P54868 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
HMGCS2P54868 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
HMGCS2P54868 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC28.3■■■□□ 2.12
HMGCS2P54868 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
HMGCS2P54868 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC28.3■■■□□ 2.12
HMGCS2P54868 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
HMGCS2P54868 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
HMGCS2P54868 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
HMGCS2P54868 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.28■■■□□ 2.12
HMGCS2P54868 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC28.28■■■□□ 2.12
HMGCS2P54868 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
HMGCS2P54868 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC28.28■■■□□ 2.12
HMGCS2P54868 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC28.28■■■□□ 2.12
HMGCS2P54868 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
HMGCS2P54868 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC28.28■■■□□ 2.12
HMGCS2P54868 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
HMGCS2P54868 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
HMGCS2P54868 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
HMGCS2P54868 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC28.27■■■□□ 2.12
HMGCS2P54868 LINC01003-201ENST00000564834 1764 ntBASIC28.27■■■□□ 2.12
HMGCS2P54868 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
HMGCS2P54868 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC28.27■■■□□ 2.12
HMGCS2P54868 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
HMGCS2P54868 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC28.27■■■□□ 2.12
HMGCS2P54868 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
HMGCS2P54868 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC28.26■■■□□ 2.11
HMGCS2P54868 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC28.26■■■□□ 2.11
HMGCS2P54868 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC28.26■■■□□ 2.11
HMGCS2P54868 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
HMGCS2P54868 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
HMGCS2P54868 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
HMGCS2P54868 Z92544.1-202ENST00000571933 1220 ntBASIC28.25■■■□□ 2.11
HMGCS2P54868 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
HMGCS2P54868 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
HMGCS2P54868 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC28.24■■■□□ 2.11
HMGCS2P54868 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
HMGCS2P54868 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC28.23■■■□□ 2.11
HMGCS2P54868 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
HMGCS2P54868 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
HMGCS2P54868 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
HMGCS2P54868 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
HMGCS2P54868 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
HMGCS2P54868 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC28.22■■■□□ 2.11
HMGCS2P54868 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC28.22■■■□□ 2.11
HMGCS2P54868 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC28.22■■■□□ 2.11
HMGCS2P54868 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
HMGCS2P54868 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
HMGCS2P54868 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
HMGCS2P54868 CREM-229ENST00000474362 1030 ntTSL 2 BASIC28.21■■■□□ 2.11
HMGCS2P54868 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC28.21■■■□□ 2.11
HMGCS2P54868 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
HMGCS2P54868 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
HMGCS2P54868 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
HMGCS2P54868 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
HMGCS2P54868 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC28.2■■■□□ 2.1
HMGCS2P54868 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
HMGCS2P54868 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
HMGCS2P54868 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC28.2■■■□□ 2.1
HMGCS2P54868 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC28.2■■■□□ 2.1
HMGCS2P54868 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC28.2■■■□□ 2.1
HMGCS2P54868 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
HMGCS2P54868 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
HMGCS2P54868 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
HMGCS2P54868 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
HMGCS2P54868 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC28.19■■■□□ 2.1
HMGCS2P54868 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC28.19■■■□□ 2.1
HMGCS2P54868 AC019069.1-201ENST00000610008 1333 ntBASIC28.19■■■□□ 2.1
HMGCS2P54868 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
HMGCS2P54868 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
HMGCS2P54868 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
HMGCS2P54868 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
HMGCS2P54868 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
HMGCS2P54868 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
HMGCS2P54868 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
HMGCS2P54868 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC28.18■■■□□ 2.1
HMGCS2P54868 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC28.18■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms