Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 MIR6724-3-201ENST00000622482 92 ntBASIC32.81■■■□□ 2.84
RXRBP28702 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
RXRBP28702 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC32.8■■■□□ 2.84
RXRBP28702 GLI3-203ENST00000437480 451 ntTSL 2 BASIC32.8■■■□□ 2.84
RXRBP28702 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
RXRBP28702 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC32.8■■■□□ 2.84
RXRBP28702 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC32.8■■■□□ 2.84
RXRBP28702 AC010997.5-201ENST00000609182 354 ntBASIC32.8■■■□□ 2.84
RXRBP28702 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
RXRBP28702 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC32.79■■■□□ 2.84
RXRBP28702 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC32.79■■■□□ 2.84
RXRBP28702 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC32.79■■■□□ 2.84
RXRBP28702 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC32.79■■■□□ 2.84
RXRBP28702 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
RXRBP28702 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC32.79■■■□□ 2.84
RXRBP28702 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
RXRBP28702 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
RXRBP28702 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
RXRBP28702 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC32.77■■■□□ 2.84
RXRBP28702 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC32.77■■■□□ 2.84
RXRBP28702 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC32.77■■■□□ 2.84
RXRBP28702 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
RXRBP28702 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
RXRBP28702 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
RXRBP28702 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC32.75■■■□□ 2.83
RXRBP28702 SUDS3P1-201ENST00000505831 966 ntBASIC32.75■■■□□ 2.83
RXRBP28702 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
RXRBP28702 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC32.75■■■□□ 2.83
RXRBP28702 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
RXRBP28702 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
RXRBP28702 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
RXRBP28702 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC32.74■■■□□ 2.83
RXRBP28702 AL135925.1-201ENST00000605920 1701 ntBASIC32.72■■■□□ 2.83
RXRBP28702 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
RXRBP28702 AL512631.2-201ENST00000604634 923 ntBASIC32.72■■■□□ 2.83
RXRBP28702 AL031432.3-201ENST00000607698 485 ntBASIC32.72■■■□□ 2.83
RXRBP28702 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
RXRBP28702 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
RXRBP28702 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC32.71■■■□□ 2.83
RXRBP28702 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
RXRBP28702 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
RXRBP28702 QDPR-206ENST00000508623 601 ntTSL 3 BASIC32.71■■■□□ 2.83
RXRBP28702 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC32.71■■■□□ 2.83
RXRBP28702 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
RXRBP28702 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
RXRBP28702 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC32.7■■■□□ 2.83
RXRBP28702 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
RXRBP28702 MIR6821-201ENST00000617625 74 ntBASIC32.7■■■□□ 2.83
RXRBP28702 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
RXRBP28702 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
RXRBP28702 AL359504.2-201ENST00000605506 1601 ntBASIC32.69■■■□□ 2.82
RXRBP28702 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC32.68■■■□□ 2.82
RXRBP28702 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC32.68■■■□□ 2.82
RXRBP28702 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
RXRBP28702 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC32.68■■■□□ 2.82
RXRBP28702 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC32.68■■■□□ 2.82
RXRBP28702 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC32.68■■■□□ 2.82
RXRBP28702 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC32.67■■■□□ 2.82
RXRBP28702 LSM4-201ENST00000252816 986 ntTSL 2 BASIC32.67■■■□□ 2.82
RXRBP28702 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
RXRBP28702 HYI-206ENST00000372434 1025 ntTSL 5 BASIC32.66■■■□□ 2.82
RXRBP28702 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC32.66■■■□□ 2.82
RXRBP28702 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC32.66■■■□□ 2.82
RXRBP28702 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
RXRBP28702 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC32.65■■■□□ 2.82
RXRBP28702 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
RXRBP28702 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
RXRBP28702 AL162430.1-201ENST00000480705 870 ntBASIC32.65■■■□□ 2.82
RXRBP28702 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC32.65■■■□□ 2.82
RXRBP28702 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC32.65■■■□□ 2.82
RXRBP28702 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC32.65■■■□□ 2.82
RXRBP28702 AC120024.1-201ENST00000562672 995 ntBASIC32.64■■■□□ 2.82
RXRBP28702 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC32.64■■■□□ 2.82
RXRBP28702 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
RXRBP28702 MTDHP2-201ENST00000601468 714 ntBASIC32.63■■■□□ 2.81
RXRBP28702 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
RXRBP28702 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
RXRBP28702 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC32.62■■■□□ 2.81
RXRBP28702 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC32.62■■■□□ 2.81
RXRBP28702 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
RXRBP28702 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC32.61■■■□□ 2.81
RXRBP28702 AC090192.1-201ENST00000517740 490 ntBASIC32.61■■■□□ 2.81
RXRBP28702 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
RXRBP28702 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
RXRBP28702 AC097381.1-201ENST00000429019 1296 ntBASIC32.6■■■□□ 2.81
RXRBP28702 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
RXRBP28702 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC32.59■■■□□ 2.81
RXRBP28702 AK3-203ENST00000447596 705 ntTSL 2 BASIC32.59■■■□□ 2.81
RXRBP28702 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
RXRBP28702 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
RXRBP28702 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
RXRBP28702 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC32.58■■■□□ 2.81
RXRBP28702 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
RXRBP28702 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC32.58■■■□□ 2.81
RXRBP28702 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
RXRBP28702 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC32.58■■■□□ 2.81
RXRBP28702 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC32.58■■■□□ 2.81
RXRBP28702 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC32.57■■■□□ 2.8
RXRBP28702 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC32.57■■■□□ 2.8
RXRBP28702 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC32.57■■■□□ 2.8
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms