Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.04■■□□□ 1.44
MSH3P20585 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
MSH3P20585 AC026202.3-201ENST00000600805 1127 ntBASIC24.04■■□□□ 1.44
MSH3P20585 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC24.03■■□□□ 1.44
MSH3P20585 AC133552.2-201ENST00000619106 1032 ntBASIC24.03■■□□□ 1.44
MSH3P20585 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
MSH3P20585 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC24.02■■□□□ 1.44
MSH3P20585 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH3P20585 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
MSH3P20585 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
MSH3P20585 HES4-204ENST00000484667 667 ntTSL 3 BASIC24.02■■□□□ 1.44
MSH3P20585 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC24.02■■□□□ 1.44
MSH3P20585 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC24.02■■□□□ 1.44
MSH3P20585 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
MSH3P20585 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH3P20585 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
MSH3P20585 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH3P20585 AC009831.1-201ENST00000580420 1582 ntBASIC24.01■■□□□ 1.43
MSH3P20585 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
MSH3P20585 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
MSH3P20585 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC24■■□□□ 1.43
MSH3P20585 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC24■■□□□ 1.43
MSH3P20585 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC24■■□□□ 1.43
MSH3P20585 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
MSH3P20585 AC091060.1-201ENST00000623524 1766 ntBASIC23.99■■□□□ 1.43
MSH3P20585 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH3P20585 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
MSH3P20585 RAP2CP1-202ENST00000605179 643 ntBASIC23.99■■□□□ 1.43
MSH3P20585 U85056.1-201ENST00000616429 682 ntBASIC23.99■■□□□ 1.43
MSH3P20585 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH3P20585 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.99■■□□□ 1.43
MSH3P20585 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
MSH3P20585 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH3P20585 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH3P20585 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
MSH3P20585 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.98■■□□□ 1.43
MSH3P20585 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
MSH3P20585 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
MSH3P20585 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.97■■□□□ 1.43
MSH3P20585 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH3P20585 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.97■■□□□ 1.43
MSH3P20585 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
MSH3P20585 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
MSH3P20585 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.96■■□□□ 1.43
MSH3P20585 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH3P20585 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH3P20585 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
MSH3P20585 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH3P20585 NTF6A-201ENST00000591175 560 ntBASIC23.96■■□□□ 1.43
MSH3P20585 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.95■■□□□ 1.42
MSH3P20585 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC23.95■■□□□ 1.42
MSH3P20585 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
MSH3P20585 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH3P20585 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH3P20585 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH3P20585 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH3P20585 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH3P20585 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH3P20585 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
MSH3P20585 AL592293.1-201ENST00000502889 1188 ntBASIC23.93■■□□□ 1.42
MSH3P20585 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
MSH3P20585 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.93■■□□□ 1.42
MSH3P20585 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
MSH3P20585 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH3P20585 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH3P20585 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH3P20585 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
MSH3P20585 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
MSH3P20585 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.92■■□□□ 1.42
MSH3P20585 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
MSH3P20585 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.92■■□□□ 1.42
MSH3P20585 AC145676.1-201ENST00000514988 2004 ntBASIC23.91■■□□□ 1.42
MSH3P20585 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
MSH3P20585 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH3P20585 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
MSH3P20585 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.91■■□□□ 1.42
MSH3P20585 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
MSH3P20585 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH3P20585 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
MSH3P20585 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC23.91■■□□□ 1.42
MSH3P20585 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
MSH3P20585 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
MSH3P20585 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
MSH3P20585 AC092803.2-201ENST00000564287 1899 ntBASIC23.9■■□□□ 1.42
MSH3P20585 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
MSH3P20585 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
MSH3P20585 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
MSH3P20585 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC23.89■■□□□ 1.41
MSH3P20585 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.89■■□□□ 1.41
MSH3P20585 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
MSH3P20585 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
MSH3P20585 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
MSH3P20585 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.88■■□□□ 1.41
MSH3P20585 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH3P20585 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH3P20585 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH3P20585 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH3P20585 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH3P20585 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC23.88■■□□□ 1.41
MSH3P20585 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC23.88■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms