Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
HMGB3O15347 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB3O15347 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB3O15347 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB3O15347 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB3O15347 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB3O15347 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB3O15347 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB3O15347 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.37■□□□□ 0.69
HMGB3O15347 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB3O15347 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HMGB3O15347 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB3O15347 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB3O15347 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB3O15347 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC19.36■□□□□ 0.69
HMGB3O15347 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB3O15347 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB3O15347 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB3O15347 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
HMGB3O15347 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGB3O15347 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC19.35■□□□□ 0.69
HMGB3O15347 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.35■□□□□ 0.69
HMGB3O15347 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGB3O15347 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
HMGB3O15347 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB3O15347 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB3O15347 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB3O15347 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB3O15347 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB3O15347 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB3O15347 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HMGB3O15347 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HMGB3O15347 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB3O15347 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
HMGB3O15347 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB3O15347 AC135983.2-203ENST00000454486 1613 ntBASIC19.33■□□□□ 0.68
HMGB3O15347 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
HMGB3O15347 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB3O15347 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB3O15347 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB3O15347 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB3O15347 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB3O15347 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
HMGB3O15347 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HMGB3O15347 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 EBPL-202ENST00000378268 680 ntTSL 3 BASIC19.31■□□□□ 0.68
HMGB3O15347 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 SETD8P1-201ENST00000623146 1180 ntBASIC19.31■□□□□ 0.68
HMGB3O15347 WHAMMP2-203ENST00000563942 1603 ntBASIC19.31■□□□□ 0.68
HMGB3O15347 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
HMGB3O15347 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB3O15347 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB3O15347 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC19.3■□□□□ 0.68
HMGB3O15347 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB3O15347 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HMGB3O15347 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB3O15347 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB3O15347 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB3O15347 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB3O15347 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB3O15347 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB3O15347 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB3O15347 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
HMGB3O15347 RARRES2P7-201ENST00000567349 469 ntBASIC19.28■□□□□ 0.68
HMGB3O15347 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.28■□□□□ 0.68
HMGB3O15347 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.28■□□□□ 0.68
HMGB3O15347 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
HMGB3O15347 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB3O15347 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.27■□□□□ 0.68
HMGB3O15347 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC19.27■□□□□ 0.68
HMGB3O15347 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB3O15347 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB3O15347 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.27■□□□□ 0.68
HMGB3O15347 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC19.27■□□□□ 0.67
HMGB3O15347 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGB3O15347 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGB3O15347 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
HMGB3O15347 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB3O15347 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB3O15347 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB3O15347 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB3O15347 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB3O15347 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB3O15347 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB3O15347 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB3O15347 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB3O15347 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 305.6 ms