Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
HMGB3O15347 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB3O15347 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB3O15347 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB3O15347 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB3O15347 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB3O15347 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB3O15347 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB3O15347 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.37■□□□□ 0.69
HMGB3O15347 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB3O15347 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HMGB3O15347 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB3O15347 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB3O15347 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB3O15347 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC19.36■□□□□ 0.69
HMGB3O15347 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB3O15347 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB3O15347 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB3O15347 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
HMGB3O15347 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGB3O15347 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC19.35■□□□□ 0.69
HMGB3O15347 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.35■□□□□ 0.69
HMGB3O15347 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGB3O15347 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
HMGB3O15347 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB3O15347 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB3O15347 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB3O15347 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB3O15347 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB3O15347 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB3O15347 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HMGB3O15347 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HMGB3O15347 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB3O15347 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
HMGB3O15347 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB3O15347 AC135983.2-203ENST00000454486 1613 ntBASIC19.33■□□□□ 0.68
HMGB3O15347 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
HMGB3O15347 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB3O15347 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB3O15347 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB3O15347 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB3O15347 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB3O15347 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
HMGB3O15347 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HMGB3O15347 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 EBPL-202ENST00000378268 680 ntTSL 3 BASIC19.31■□□□□ 0.68
HMGB3O15347 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 SETD8P1-201ENST00000623146 1180 ntBASIC19.31■□□□□ 0.68
HMGB3O15347 WHAMMP2-203ENST00000563942 1603 ntBASIC19.31■□□□□ 0.68
HMGB3O15347 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB3O15347 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
HMGB3O15347 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB3O15347 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB3O15347 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC19.3■□□□□ 0.68
HMGB3O15347 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB3O15347 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HMGB3O15347 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB3O15347 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB3O15347 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB3O15347 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB3O15347 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB3O15347 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB3O15347 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB3O15347 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
HMGB3O15347 RARRES2P7-201ENST00000567349 469 ntBASIC19.28■□□□□ 0.68
HMGB3O15347 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.28■□□□□ 0.68
HMGB3O15347 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.28■□□□□ 0.68
HMGB3O15347 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB3O15347 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
HMGB3O15347 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB3O15347 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.27■□□□□ 0.68
HMGB3O15347 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC19.27■□□□□ 0.68
HMGB3O15347 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB3O15347 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB3O15347 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.27■□□□□ 0.68
HMGB3O15347 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC19.27■□□□□ 0.67
HMGB3O15347 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGB3O15347 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGB3O15347 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
HMGB3O15347 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB3O15347 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB3O15347 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB3O15347 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB3O15347 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB3O15347 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB3O15347 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB3O15347 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB3O15347 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB3O15347 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms