Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.075e-7■□□□□ 9.8
UPF1Q92900 ATP6V1B2-204ENST00000521442 738 ntTSL 311.63□□□□□ -0.555e-7■□□□□ 9.8
UPF1Q92900 ATP6V1B2-206ENST00000523482 6907 ntTSL 25.97□□□□□ -1.455e-7■□□□□ 9.8
UPF1Q92900 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC27.41■■□□□ 1.984e-7■□□□□ 9.8
UPF1Q92900 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.674e-7■□□□□ 9.8
UPF1Q92900 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC25.36■■□□□ 1.655e-7■□□□□ 9.8
UPF1Q92900 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC23.01■■□□□ 1.274e-7■□□□□ 9.8
UPF1Q92900 COLGALT1-203ENST00000597075 737 ntTSL 222.52■■□□□ 1.25e-7■□□□□ 9.8
UPF1Q92900 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.895e-7■□□□□ 9.8
UPF1Q92900 COLGALT1-204ENST00000597147 654 ntAPPRIS ALT2 TSL 520.55■□□□□ 0.885e-7■□□□□ 9.8
UPF1Q92900 SH3BP2-228ENST00000515737 2579 ntTSL 220.18■□□□□ 0.824e-7■□□□□ 9.8
UPF1Q92900 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.775e-7■□□□□ 9.8
UPF1Q92900 CHKA-203ENST00000525155 1201 ntTSL 517.97■□□□□ 0.475e-7■□□□□ 9.8
UPF1Q92900 SH3BP2-229ENST00000515802 2247 ntTSL 216.62■□□□□ 0.254e-7■□□□□ 9.8
UPF1Q92900 CHKA-207ENST00000533728 662 ntTSL 214.52□□□□□ -0.095e-7■□□□□ 9.8
UPF1Q92900 HABP4-203ENST00000466976 3150 ntTSL 212.27□□□□□ -0.455e-7■□□□□ 9.8
UPF1Q92900 SH3BP2-217ENST00000510204 3617 ntTSL 211.47□□□□□ -0.574e-7■□□□□ 9.8
UPF1Q92900 PSTPIP2-204ENST00000589328 2900 ntTSL 1 (best) BASIC12.11□□□□□ -0.477e-7■□□□□ 9.8
UPF1Q92900 PSTPIP2-201ENST00000409746 3000 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.547e-7■□□□□ 9.8
UPF1Q92900 C7orf50-208ENST00000491163 621 ntAPPRIS ALT2 TSL 327.8■■■□□ 2.042e-7■□□□□ 9.8
UPF1Q92900 C7orf50-205ENST00000444428 507 ntAPPRIS ALT2 TSL 322.63■■□□□ 1.212e-7■□□□□ 9.8
UPF1Q92900 ATF7-203ENST00000546661 1125 ntTSL 1 (best)15.54■□□□□ 0.082e-11■□□□□ 9.8
UPF1Q92900 THAP7-203ENST00000466670 1080 ntTSL 527.23■■□□□ 1.952e-8■□□□□ 9.8
UPF1Q92900 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.332e-8■□□□□ 9.8
UPF1Q92900 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.962e-8■□□□□ 9.8
UPF1Q92900 THAP7-207ENST00000488975 507 ntTSL 520.51■□□□□ 0.872e-8■□□□□ 9.8
UPF1Q92900 AGPAT3-215ENST00000484865 588 ntTSL 215.39■□□□□ 0.052e-8■□□□□ 9.8
UPF1Q92900 PTP4A1-206ENST00000627002 447 ntTSL 5 BASIC9.77□□□□□ -0.852e-8■□□□□ 9.8
UPF1Q92900 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC9.33□□□□□ -0.922e-8■□□□□ 9.8
UPF1Q92900 KPNB1-211ENST00000582097 2347 ntTSL 210.2□□□□□ -0.782e-8■□□□□ 9.8
UPF1Q92900 KPNB1-209ENST00000580158 603 ntTSL 210.19□□□□□ -0.782e-8■□□□□ 9.8
UPF1Q92900 KPNB1-202ENST00000535458 3163 ntTSL 2 BASIC9.56□□□□□ -0.882e-8■□□□□ 9.8
UPF1Q92900 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC8.08□□□□□ -1.122e-8■□□□□ 9.8
UPF1Q92900 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.331e-7■□□□□ 9.8
UPF1Q92900 PTP4A2-206ENST00000489313 1551 ntTSL 216.56■□□□□ 0.241e-16■□□□□ 9.8
UPF1Q92900 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC25.77■■□□□ 1.724e-34■□□□□ 9.8
UPF1Q92900 SNHG10-204ENST00000555866 221 ntTSL 222.34■■□□□ 1.174e-34■□□□□ 9.8
UPF1Q92900 SNHG10-203ENST00000554169 981 ntTSL 220.77■□□□□ 0.924e-34■□□□□ 9.8
UPF1Q92900 SNHG10-202ENST00000553559 428 ntTSL 318.41■□□□□ 0.544e-34■□□□□ 9.8
UPF1Q92900 SCARNA13-201ENST00000516672 275 ntBASIC7.49□□□□□ -1.214e-34■□□□□ 9.8
UPF1Q92900 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC23.91■■□□□ 1.421e-10■□□□□ 9.7
UPF1Q92900 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.031e-6■□□□□ 9.7
UPF1Q92900 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC13.33□□□□□ -0.281e-6■□□□□ 9.7
UPF1Q92900 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.371e-6■□□□□ 9.7
UPF1Q92900 ALDH3A2-203ENST00000395575 3640 ntAPPRIS P3 TSL 5 BASIC12.24□□□□□ -0.451e-6■□□□□ 9.7
UPF1Q92900 ALDH3A2-206ENST00000472059 3710 ntTSL 212.01□□□□□ -0.491e-6■□□□□ 9.7
UPF1Q92900 ALDH3A2-202ENST00000339618 3828 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.521e-6■□□□□ 9.7
UPF1Q92900 ALDH3A2-219ENST00000579855 3583 ntAPPRIS P3 TSL 5 BASIC11.42□□□□□ -0.581e-6■□□□□ 9.7
UPF1Q92900 ALDH3A2-210ENST00000573505 3512 nt8.92□□□□□ -0.981e-6■□□□□ 9.7
UPF1Q92900 BSDC1-206ENST00000455895 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.285e-8■□□□□ 9.7
UPF1Q92900 BSDC1-201ENST00000341071 4599 ntTSL 2 BASIC12.92□□□□□ -0.345e-8■□□□□ 9.7
UPF1Q92900 BSDC1-204ENST00000444377 2925 ntTSL 1 (best)11.76□□□□□ -0.535e-8■□□□□ 9.7
UPF1Q92900 PLXNA1-204ENST00000505278 536 ntTSL 423.57■■□□□ 1.366e-9■□□□□ 9.7
UPF1Q92900 CD164-204ENST00000413644 2414 ntTSL 1 (best) BASIC14.62□□□□□ -0.073e-10■□□□□ 9.7
UPF1Q92900 CD164-202ENST00000310786 2993 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.823e-10■□□□□ 9.7
UPF1Q92900 CD164-203ENST00000324953 2936 ntTSL 1 (best) BASIC9.27□□□□□ -0.933e-10■□□□□ 9.7
UPF1Q92900 CD164-201ENST00000275080 2954 ntTSL 1 (best) BASIC8.86□□□□□ -0.993e-10■□□□□ 9.7
UPF1Q92900 CD164-205ENST00000415861 4963 ntTSL 1 (best)5.69□□□□□ -1.53e-10■□□□□ 9.7
UPF1Q92900 RNF10-223ENST00000545419 1336 ntTSL 510.91□□□□□ -0.666e-7■□□□□ 9.7
UPF1Q92900 CP-208ENST00000474204 712 ntTSL 214.21□□□□□ -0.136e-12■□□□□ 9.7
UPF1Q92900 CP-213ENST00000494544 2806 ntTSL 1 (best)5.72□□□□□ -1.496e-12■□□□□ 9.7
UPF1Q92900 SYVN1-209ENST00000527765 516 ntTSL 318.49■□□□□ 0.554e-9■□□□□ 9.7
UPF1Q92900 RPL22L1-202ENST00000463836 506 ntAPPRIS ALT1 TSL 2 BASIC13.92□□□□□ -0.182e-7■□□□□ 9.7
UPF1Q92900 RPL22L1-204ENST00000475836 581 ntTSL 1 (best)12.97□□□□□ -0.332e-7■□□□□ 9.7
UPF1Q92900 RPL22L1-205ENST00000478578 900 ntTSL 212.97□□□□□ -0.332e-7■□□□□ 9.7
UPF1Q92900 RPL22L1-201ENST00000295830 2190 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.422e-7■□□□□ 9.7
UPF1Q92900 RPL22L1-206ENST00000494771 587 ntTSL 312.37□□□□□ -0.432e-7■□□□□ 9.7
UPF1Q92900 RPL22L1-203ENST00000466674 545 ntTSL 311.09□□□□□ -0.632e-7■□□□□ 9.7
UPF1Q92900 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC32.16■■■□□ 2.741e-9■□□□□ 9.7
UPF1Q92900 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.211e-9■□□□□ 9.7
UPF1Q92900 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.271e-8■□□□□ 9.7
UPF1Q92900 PIP4K2A-205ENST00000474335 559 ntTSL 220.98■□□□□ 0.955e-7■□□□□ 9.7
UPF1Q92900 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.343e-11■□□□□ 9.7
UPF1Q92900 AC046185.1-201ENST00000580553 2128 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.393e-11■□□□□ 9.7
UPF1Q92900 NUCB1-204ENST00000424608 884 ntAPPRIS ALT2 TSL 527.59■■■□□ 2.015e-7■□□□□ 9.7
UPF1Q92900 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.26e-8■□□□□ 9.6
UPF1Q92900 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.16□□□□□ -1.586e-8■□□□□ 9.6
UPF1Q92900 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.5□□□□□ -1.696e-8■□□□□ 9.6
UPF1Q92900 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.67□□□□□ -1.826e-8■□□□□ 9.6
UPF1Q92900 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.271e-7■□□□□ 9.6
UPF1Q92900 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.063e-7■□□□□ 9.6
UPF1Q92900 CDH1-212ENST00000611625 4878 ntTSL 5 BASIC12.27□□□□□ -0.443e-7■□□□□ 9.6
UPF1Q92900 CDH1-210ENST00000566612 4138 ntTSL 1 (best)11.59□□□□□ -0.553e-7■□□□□ 9.6
UPF1Q92900 CDH1-214ENST00000621016 3304 ntTSL 5 BASIC10.41□□□□□ -0.743e-7■□□□□ 9.6
UPF1Q92900 UPF2-202ENST00000357604 5193 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.598e-7■□□□□ 9.6
UPF1Q92900 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.268e-7■□□□□ 9.6
UPF1Q92900 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.398e-7■□□□□ 9.6
UPF1Q92900 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.87■□□□□ 0.132e-7■□□□□ 9.6
UPF1Q92900 AKT1-210ENST00000554826 572 ntTSL 322.17■■□□□ 1.142e-7■□□□□ 9.6
UPF1Q92900 MED20-207ENST00000482361 1481 ntTSL 218.69■□□□□ 0.582e-7■□□□□ 9.6
UPF1Q92900 AKT1-212ENST00000555380 534 ntTSL 416.97■□□□□ 0.312e-7■□□□□ 9.6
UPF1Q92900 ENSA-215ENST00000638926 360 ntTSL 5 BASIC12.28□□□□□ -0.442e-7■□□□□ 9.6
UPF1Q92900 EYA3-202ENST00000373864 2459 ntTSL 5 BASIC10.93□□□□□ -0.662e-7■□□□□ 9.6
UPF1Q92900 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC10.69□□□□□ -0.72e-7■□□□□ 9.6
UPF1Q92900 ENSA-212ENST00000505321 552 ntTSL 59.85□□□□□ -0.832e-7■□□□□ 9.6
UPF1Q92900 ENSA-204ENST00000356527 2546 ntTSL 1 (best) BASIC8.22□□□□□ -1.092e-7■□□□□ 9.6
UPF1Q92900 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC7.77□□□□□ -1.172e-7■□□□□ 9.6
UPF1Q92900 SOX9-201ENST00000245479 3935 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.593e-8■□□□□ 9.6
UPF1Q92900 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.955e-6■□□□□ 9.6
UPF1Q92900 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC20.95■□□□□ 0.945e-6■□□□□ 9.6
Retrieved 100 of 15,879 protein–RNA pairs in 450.4 ms