RNA–Protein interactions for RNA: ENST00000349225.2

RLIM-202, Transcript of ring finger protein, LIM domain interacting, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RLIM, Length 3,478 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RLIM-202ENST00000349225 NISCHQ9Y2I1 1504 aa26.95■■□□□ 1.91
RLIM-202ENST00000349225 HRCP23327 699 aa24.39■■□□□ 1.49
RLIM-202ENST00000349225 PPARGC1BQ86YN6 1023 aaKnown RBP24■■□□□ 1.43
RLIM-202ENST00000349225 SHROOM4Q9ULL8 1493 aa23.94■■□□□ 1.42
RLIM-202ENST00000349225 MYO15BQ96JP2 1530 aa23.91■■□□□ 1.42
RLIM-202ENST00000349225 PCGF6Q9BYE7 350 aa23.83■■□□□ 1.4
RLIM-202ENST00000349225 SUPT5HO00267 1087 aaKnown RBP23.82■■□□□ 1.4
RLIM-202ENST00000349225 CCDC180Q9P1Z9 1646 aa23.78■■□□□ 1.4
RLIM-202ENST00000349225 CHIC1Q5VXU3 224 aa23.55■■□□□ 1.36
RLIM-202ENST00000349225 PELP1Q8IZL8 1130 aaKnown RBP23.43■■□□□ 1.34
RLIM-202ENST00000349225 DCAF1Q9Y4B6 1507 aa23.23■■□□□ 1.31
RLIM-202ENST00000349225 SCAF1Q9H7N4 1312 aaKnown RBP23.21■■□□□ 1.31
RLIM-202ENST00000349225 LOC105371045A0A1W2PR82 267 aa23.06■■□□□ 1.28
RLIM-202ENST00000349225 TRIM26Q12899 539 aaPredicted RBP22.97■■□□□ 1.27
RLIM-202ENST00000349225 ZCCHC6Q5VYS8 1495 aaKnown RBP22.96■■□□□ 1.27
RLIM-202ENST00000349225 ZEB1P37275 1124 aaPredicted RBP22.69■■□□□ 1.22
RLIM-202ENST00000349225 NEUROD1Q13562 356 aa22.51■■□□□ 1.19
RLIM-202ENST00000349225 ACIN1Q9UKV3 1341 aaKnown RBP22.5■■□□□ 1.19
RLIM-202ENST00000349225 MYT1Q01538 1121 aa22.44■■□□□ 1.18
RLIM-202ENST00000349225 GTF3C3Q9Y5Q9 886 aa22.33■■□□□ 1.17
RLIM-202ENST00000349225 DCAF8L2P0C7V8 631 aa22.25■■□□□ 1.15
RLIM-202ENST00000349225 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.07■■□□□ 1.12
RLIM-202ENST00000349225 DIEXFQ68CQ4 756 aaKnown RBP22.03■■□□□ 1.12
RLIM-202ENST00000349225 FAM9AQ8IZU1 332 aaPredicted RBP22.03■■□□□ 1.12
RLIM-202ENST00000349225 CENPBP07199 599 aaPredicted RBP22.01■■□□□ 1.11
RLIM-202ENST00000349225 EHMT2Q96KQ7 1210 aa21.97■■□□□ 1.11
RLIM-202ENST00000349225 TRIM41Q8WV44 630 aa21.95■■□□□ 1.1
RLIM-202ENST00000349225 CCER1Q8TC90 406 aaPredicted RBP21.9■■□□□ 1.1
RLIM-202ENST00000349225 ABCC9O60706 1549 aa21.85■■□□□ 1.09
RLIM-202ENST00000349225 NACADO15069 1562 aa21.85■■□□□ 1.09
RLIM-202ENST00000349225 RB1CC1Q8TDY2 1594 aa21.75■■□□□ 1.07
RLIM-202ENST00000349225 RSF1Q96T23 1441 aaPredicted RBP21.75■■□□□ 1.07
RLIM-202ENST00000349225 YTHDC1Q96MU7 727 aaKnown RBP21.7■■□□□ 1.06
RLIM-202ENST00000349225 ZNF316A6NFI3 1004 aaPredicted RBP21.57■■□□□ 1.04
RLIM-202ENST00000349225 MIER1Q8N108 512 aa21.54■■□□□ 1.04
RLIM-202ENST00000349225 UNC13AQ9UPW8 1703 aa21.48■■□□□ 1.03
RLIM-202ENST00000349225 TTBK1Q5TCY1 1321 aaPredicted RBP21.48■■□□□ 1.03
RLIM-202ENST00000349225 SCRIBQ14160 1630 aa21.33■■□□□ 1.01
RLIM-202ENST00000349225 WRNQ14191 1432 aaPredicted RBP eCLIP21.33■■□□□ 1
RLIM-202ENST00000349225 BCL11AQ9H165 835 aa21.3■■□□□ 1
RLIM-202ENST00000349225 SUPT16HQ9Y5B9 1047 aaKnown RBP21.26■□□□□ 0.99
RLIM-202ENST00000349225 ANP32EQ9BTT0 268 aa21.22■□□□□ 0.99
RLIM-202ENST00000349225 TSHZ2Q9NRE2 1034 aa21.22■□□□□ 0.99
RLIM-202ENST00000349225 CEP162Q5TB80 1403 aa21.18■□□□□ 0.98
RLIM-202ENST00000349225 EIF4G1Q04637 1599 aaKnown RBP21.16■□□□□ 0.98
RLIM-202ENST00000349225 CECR2Q9BXF3 1484 aa21.14■□□□□ 0.97
RLIM-202ENST00000349225 BICRAQ9NZM4 1560 aa21.12■□□□□ 0.97
RLIM-202ENST00000349225 MROH2BQ7Z745 1585 aa21.11■□□□□ 0.97
RLIM-202ENST00000349225 CSRNP3Q8WYN3 585 aa21.09■□□□□ 0.97
RLIM-202ENST00000349225 WIZO95785 1651 aa21.08■□□□□ 0.96
RLIM-202ENST00000349225 CCDC88BA6NC98 1476 aa21.03■□□□□ 0.96
RLIM-202ENST00000349225 ABCC8Q09428 1581 aa21.01■□□□□ 0.95
RLIM-202ENST00000349225 HNRNPUL2Q1KMD3 747 aaKnown RBP21■□□□□ 0.95
RLIM-202ENST00000349225 CLSPNQ9HAW4 1339 aa20.99■□□□□ 0.95
RLIM-202ENST00000349225 TNIKQ9UKE5 1360 aa20.99■□□□□ 0.95
RLIM-202ENST00000349225 SOGA1O94964 1423 aa20.96■□□□□ 0.95
RLIM-202ENST00000349225 RUSC2Q8N2Y8 1516 aa20.88■□□□□ 0.93
RLIM-202ENST00000349225 BAZ1AQ9NRL2 1556 aaPredicted RBP20.86■□□□□ 0.93
RLIM-202ENST00000349225 UBTFP17480 764 aaKnown RBP20.79■□□□□ 0.92
RLIM-202ENST00000349225 PEG3Q9GZU2 1588 aa20.78■□□□□ 0.92
RLIM-202ENST00000349225 KCNH8Q96L42 1107 aa20.78■□□□□ 0.92
RLIM-202ENST00000349225 BCANQ96GW7 911 aa20.76■□□□□ 0.91
RLIM-202ENST00000349225 SMARCA4P51532 1647 aa20.74■□□□□ 0.91
RLIM-202ENST00000349225 GOLGA3Q08378 1498 aa20.68■□□□□ 0.9
RLIM-202ENST00000349225 DHX57Q6P158 1386 aaKnown RBP20.68■□□□□ 0.9
RLIM-202ENST00000349225 RBM19Q9Y4C8 960 aaKnown RBP20.66■□□□□ 0.9
RLIM-202ENST00000349225 EEA1Q15075 1411 aa20.63■□□□□ 0.89
RLIM-202ENST00000349225 MSH5O43196 834 aa20.61■□□□□ 0.89
RLIM-202ENST00000349225 FKBP8Q14318 412 aa20.61■□□□□ 0.89
RLIM-202ENST00000349225 CLIP1P30622 1438 aa20.61■□□□□ 0.89
RLIM-202ENST00000349225 SMARCA2P51531 1590 aa20.58■□□□□ 0.88
RLIM-202ENST00000349225 TOP2AP11388 1531 aaKnown RBP20.56■□□□□ 0.88
RLIM-202ENST00000349225 VPS8Q8N3P4 1428 aa20.56■□□□□ 0.88
RLIM-202ENST00000349225 ITGAEP38570 1179 aa20.48■□□□□ 0.87
RLIM-202ENST00000349225 PRKCSHP14314 528 aaPredicted RBP20.47■□□□□ 0.87
RLIM-202ENST00000349225 KIF21BO75037 1637 aa20.46■□□□□ 0.87
RLIM-202ENST00000349225 CEP164Q9UPV0 1460 aa20.45■□□□□ 0.86
RLIM-202ENST00000349225 APLP2Q06481 763 aa20.36■□□□□ 0.85
RLIM-202ENST00000349225 RAPGEF2Q9Y4G8 1499 aa20.36■□□□□ 0.85
RLIM-202ENST00000349225 RANGAP1P46060 587 aaPredicted RBP20.35■□□□□ 0.85
RLIM-202ENST00000349225 SYNJ1O43426 1573 aa20.32■□□□□ 0.84
RLIM-202ENST00000349225 KANK4Q5T7N3 995 aaPredicted RBP20.31■□□□□ 0.84
RLIM-202ENST00000349225 DDX10Q13206 875 aaKnown RBP20.29■□□□□ 0.84
RLIM-202ENST00000349225 TRIM52Q96A61 297 aa20.29■□□□□ 0.84
RLIM-202ENST00000349225 BAZ1BQ9UIG0 1483 aaKnown RBP20.28■□□□□ 0.84
RLIM-202ENST00000349225 CUX2O14529 1486 aa20.27■□□□□ 0.84
RLIM-202ENST00000349225 MAPKBP1O60336 1514 aa20.26■□□□□ 0.83
RLIM-202ENST00000349225 FANCIQ9NVI1 1328 aa20.26■□□□□ 0.83
RLIM-202ENST00000349225 NEFLP07196 543 aa20.25■□□□□ 0.83
RLIM-202ENST00000349225 RRBP1Q9P2E9 1410 aaKnown RBP20.24■□□□□ 0.83
RLIM-202ENST00000349225 HMGXB3Q12766 1538 aa20.23■□□□□ 0.83
RLIM-202ENST00000349225 PPP1R15AO75807 674 aaPredicted RBP20.22■□□□□ 0.83
RLIM-202ENST00000349225 WDR97A6NE52 1622 aa20.21■□□□□ 0.83
RLIM-202ENST00000349225 ATAD2BQ9ULI0 1458 aa20.21■□□□□ 0.83
RLIM-202ENST00000349225 ARAP1Q96P48 1450 aa20.2■□□□□ 0.82
RLIM-202ENST00000349225 HIRIP3Q9BW71 556 aaPredicted RBP20.13■□□□□ 0.81
RLIM-202ENST00000349225 DEKP35659 375 aaKnown RBP20.12■□□□□ 0.81
RLIM-202ENST00000349225 RAB3GAP2Q9H2M9 1393 aa20.11■□□□□ 0.81
RLIM-202ENST00000349225 IRX6P78412 446 aaPredicted RBP20.1■□□□□ 0.81
RLIM-202ENST00000349225 NCAPD3P42695 1498 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms