Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC37.87■■■■□ 3.65
COL17A1Q9UMD9 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC37.87■■■■□ 3.65
COL17A1Q9UMD9 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.65
COL17A1Q9UMD9 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
COL17A1Q9UMD9 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC37.86■■■■□ 3.65
COL17A1Q9UMD9 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC37.85■■■■□ 3.65
COL17A1Q9UMD9 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC37.84■■■■□ 3.65
COL17A1Q9UMD9 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC37.84■■■■□ 3.65
COL17A1Q9UMD9 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC37.84■■■■□ 3.65
COL17A1Q9UMD9 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC37.84■■■■□ 3.65
COL17A1Q9UMD9 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC37.84■■■■□ 3.65
COL17A1Q9UMD9 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC37.84■■■■□ 3.65
COL17A1Q9UMD9 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC37.83■■■■□ 3.65
COL17A1Q9UMD9 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC37.83■■■■□ 3.65
COL17A1Q9UMD9 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.65
COL17A1Q9UMD9 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.64
COL17A1Q9UMD9 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC37.81■■■■□ 3.64
COL17A1Q9UMD9 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC37.81■■■■□ 3.64
COL17A1Q9UMD9 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC37.81■■■■□ 3.64
COL17A1Q9UMD9 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC37.8■■■■□ 3.64
COL17A1Q9UMD9 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC37.8■■■■□ 3.64
COL17A1Q9UMD9 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC37.8■■■■□ 3.64
COL17A1Q9UMD9 SRR-208ENST00000576848 588 ntTSL 4 BASIC37.8■■■■□ 3.64
COL17A1Q9UMD9 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC37.8■■■■□ 3.64
COL17A1Q9UMD9 AC096631.2-201ENST00000436136 790 ntBASIC37.79■■■■□ 3.64
COL17A1Q9UMD9 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC37.79■■■■□ 3.64
COL17A1Q9UMD9 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC37.78■■■■□ 3.64
COL17A1Q9UMD9 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC37.77■■■■□ 3.64
COL17A1Q9UMD9 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC37.77■■■■□ 3.64
COL17A1Q9UMD9 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC37.77■■■■□ 3.64
COL17A1Q9UMD9 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC37.77■■■■□ 3.64
COL17A1Q9UMD9 TSPY9P-201ENST00000440215 945 ntBASIC37.77■■■■□ 3.64
COL17A1Q9UMD9 TSPY11P-201ENST00000442607 1045 ntBASIC37.77■■■■□ 3.64
COL17A1Q9UMD9 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC37.77■■■■□ 3.64
COL17A1Q9UMD9 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC37.77■■■■□ 3.64
COL17A1Q9UMD9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC37.77■■■■□ 3.64
COL17A1Q9UMD9 AC104564.3-201ENST00000582367 638 ntBASIC37.77■■■■□ 3.64
COL17A1Q9UMD9 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC37.76■■■■□ 3.64
COL17A1Q9UMD9 RPS2P7-201ENST00000447334 885 ntBASIC37.76■■■■□ 3.63
COL17A1Q9UMD9 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC37.76■■■■□ 3.63
COL17A1Q9UMD9 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC37.75■■■■□ 3.63
COL17A1Q9UMD9 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC37.75■■■■□ 3.63
COL17A1Q9UMD9 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC37.74■■■■□ 3.63
COL17A1Q9UMD9 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC37.74■■■■□ 3.63
COL17A1Q9UMD9 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC37.73■■■■□ 3.63
COL17A1Q9UMD9 EBPL-204ENST00000378272 766 ntTSL 3 BASIC37.73■■■■□ 3.63
COL17A1Q9UMD9 AC133561.4-201ENST00000566112 224 ntBASIC37.73■■■■□ 3.63
COL17A1Q9UMD9 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC37.73■■■■□ 3.63
COL17A1Q9UMD9 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC37.73■■■■□ 3.63
COL17A1Q9UMD9 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC37.73■■■■□ 3.63
COL17A1Q9UMD9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC37.72■■■■□ 3.63
COL17A1Q9UMD9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC37.72■■■■□ 3.63
COL17A1Q9UMD9 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC37.72■■■■□ 3.63
COL17A1Q9UMD9 AL117332.1-201ENST00000622628 974 ntBASIC37.72■■■■□ 3.63
COL17A1Q9UMD9 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC37.72■■■■□ 3.63
COL17A1Q9UMD9 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC37.72■■■■□ 3.63
COL17A1Q9UMD9 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC37.72■■■■□ 3.63
COL17A1Q9UMD9 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC37.71■■■■□ 3.63
COL17A1Q9UMD9 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC37.71■■■■□ 3.63
COL17A1Q9UMD9 AC021242.3-201ENST00000607598 1377 ntBASIC37.71■■■■□ 3.63
COL17A1Q9UMD9 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC37.71■■■■□ 3.63
COL17A1Q9UMD9 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC37.7■■■■□ 3.63
COL17A1Q9UMD9 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC37.69■■■■□ 3.62
COL17A1Q9UMD9 AC100797.4-201ENST00000631653 1827 ntBASIC37.69■■■■□ 3.62
COL17A1Q9UMD9 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC37.69■■■■□ 3.62
COL17A1Q9UMD9 AC137630.3-201ENST00000607245 391 ntBASIC37.69■■■■□ 3.62
COL17A1Q9UMD9 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC37.68■■■■□ 3.62
COL17A1Q9UMD9 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC37.68■■■■□ 3.62
COL17A1Q9UMD9 MIR4466-201ENST00000606121 54 ntBASIC37.68■■■■□ 3.62
COL17A1Q9UMD9 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC37.67■■■■□ 3.62
COL17A1Q9UMD9 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC37.67■■■■□ 3.62
COL17A1Q9UMD9 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC37.67■■■■□ 3.62
COL17A1Q9UMD9 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC37.66■■■■□ 3.62
COL17A1Q9UMD9 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC37.66■■■■□ 3.62
COL17A1Q9UMD9 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC37.66■■■■□ 3.62
COL17A1Q9UMD9 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC37.66■■■■□ 3.62
COL17A1Q9UMD9 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC37.66■■■■□ 3.62
COL17A1Q9UMD9 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC37.66■■■■□ 3.62
COL17A1Q9UMD9 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC37.65■■■■□ 3.62
COL17A1Q9UMD9 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC37.64■■■■□ 3.62
COL17A1Q9UMD9 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC37.64■■■■□ 3.62
COL17A1Q9UMD9 AL359504.2-201ENST00000605506 1601 ntBASIC37.64■■■■□ 3.62
COL17A1Q9UMD9 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC37.64■■■■□ 3.62
COL17A1Q9UMD9 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC37.63■■■■□ 3.61
COL17A1Q9UMD9 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC37.63■■■■□ 3.61
COL17A1Q9UMD9 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC37.63■■■■□ 3.61
COL17A1Q9UMD9 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC37.63■■■■□ 3.61
COL17A1Q9UMD9 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC37.62■■■■□ 3.61
COL17A1Q9UMD9 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC37.62■■■■□ 3.61
COL17A1Q9UMD9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC37.62■■■■□ 3.61
COL17A1Q9UMD9 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC37.62■■■■□ 3.61
COL17A1Q9UMD9 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC37.62■■■■□ 3.61
COL17A1Q9UMD9 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC37.61■■■■□ 3.61
COL17A1Q9UMD9 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC37.61■■■■□ 3.61
COL17A1Q9UMD9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC37.61■■■■□ 3.61
COL17A1Q9UMD9 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC37.61■■■■□ 3.61
COL17A1Q9UMD9 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC37.61■■■■□ 3.61
COL17A1Q9UMD9 MIR3621-201ENST00000580529 85 ntBASIC37.61■■■■□ 3.61
COL17A1Q9UMD9 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC37.61■■■■□ 3.61
COL17A1Q9UMD9 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC37.61■■■■□ 3.61
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms