Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC26.46■■□□□ 1.83
NKX2-4Q9H2Z4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
NKX2-4Q9H2Z4 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC26.45■■□□□ 1.82
NKX2-4Q9H2Z4 RPS2P7-201ENST00000447334 885 ntBASIC26.45■■□□□ 1.82
NKX2-4Q9H2Z4 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC26.45■■□□□ 1.82
NKX2-4Q9H2Z4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC26.45■■□□□ 1.82
NKX2-4Q9H2Z4 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
NKX2-4Q9H2Z4 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
NKX2-4Q9H2Z4 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC26.44■■□□□ 1.82
NKX2-4Q9H2Z4 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
NKX2-4Q9H2Z4 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
NKX2-4Q9H2Z4 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC26.43■■□□□ 1.82
NKX2-4Q9H2Z4 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
NKX2-4Q9H2Z4 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
NKX2-4Q9H2Z4 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC26.42■■□□□ 1.82
NKX2-4Q9H2Z4 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
NKX2-4Q9H2Z4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
NKX2-4Q9H2Z4 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.41■■□□□ 1.82
NKX2-4Q9H2Z4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.41■■□□□ 1.82
NKX2-4Q9H2Z4 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
NKX2-4Q9H2Z4 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
NKX2-4Q9H2Z4 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
NKX2-4Q9H2Z4 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
NKX2-4Q9H2Z4 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.39■■□□□ 1.82
NKX2-4Q9H2Z4 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
NKX2-4Q9H2Z4 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
NKX2-4Q9H2Z4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
NKX2-4Q9H2Z4 TSPY9P-201ENST00000440215 945 ntBASIC26.39■■□□□ 1.82
NKX2-4Q9H2Z4 TSPY11P-201ENST00000442607 1045 ntBASIC26.39■■□□□ 1.82
NKX2-4Q9H2Z4 TRIR-202ENST00000588213 841 ntTSL 3 BASIC26.39■■□□□ 1.82
NKX2-4Q9H2Z4 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
NKX2-4Q9H2Z4 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
NKX2-4Q9H2Z4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC26.38■■□□□ 1.81
NKX2-4Q9H2Z4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NKX2-4Q9H2Z4 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC26.38■■□□□ 1.81
NKX2-4Q9H2Z4 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NKX2-4Q9H2Z4 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NKX2-4Q9H2Z4 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.37■■□□□ 1.81
NKX2-4Q9H2Z4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.37■■□□□ 1.81
NKX2-4Q9H2Z4 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NKX2-4Q9H2Z4 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
NKX2-4Q9H2Z4 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC26.36■■□□□ 1.81
NKX2-4Q9H2Z4 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
NKX2-4Q9H2Z4 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
NKX2-4Q9H2Z4 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
NKX2-4Q9H2Z4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC26.35■■□□□ 1.81
NKX2-4Q9H2Z4 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NKX2-4Q9H2Z4 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.35■■□□□ 1.81
NKX2-4Q9H2Z4 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NKX2-4Q9H2Z4 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NKX2-4Q9H2Z4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC26.34■■□□□ 1.81
NKX2-4Q9H2Z4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
NKX2-4Q9H2Z4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC26.34■■□□□ 1.81
NKX2-4Q9H2Z4 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NKX2-4Q9H2Z4 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NKX2-4Q9H2Z4 AC131281.2-201ENST00000520478 145 ntBASIC26.33■■□□□ 1.81
NKX2-4Q9H2Z4 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC26.33■■□□□ 1.81
NKX2-4Q9H2Z4 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
NKX2-4Q9H2Z4 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
NKX2-4Q9H2Z4 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
NKX2-4Q9H2Z4 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
NKX2-4Q9H2Z4 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
NKX2-4Q9H2Z4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NKX2-4Q9H2Z4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.32■■□□□ 1.8
NKX2-4Q9H2Z4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.32■■□□□ 1.8
NKX2-4Q9H2Z4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC26.32■■□□□ 1.8
NKX2-4Q9H2Z4 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC26.32■■□□□ 1.8
NKX2-4Q9H2Z4 ST7-AS1-201ENST00000456775 1889 ntBASIC26.32■■□□□ 1.8
NKX2-4Q9H2Z4 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
NKX2-4Q9H2Z4 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-4Q9H2Z4 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-4Q9H2Z4 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC26.31■■□□□ 1.8
NKX2-4Q9H2Z4 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
NKX2-4Q9H2Z4 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-4Q9H2Z4 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-4Q9H2Z4 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-4Q9H2Z4 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC26.3■■□□□ 1.8
NKX2-4Q9H2Z4 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NKX2-4Q9H2Z4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.29■■□□□ 1.8
NKX2-4Q9H2Z4 SRR-208ENST00000576848 588 ntTSL 4 BASIC26.29■■□□□ 1.8
NKX2-4Q9H2Z4 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
NKX2-4Q9H2Z4 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.29■■□□□ 1.8
NKX2-4Q9H2Z4 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC26.29■■□□□ 1.8
NKX2-4Q9H2Z4 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NKX2-4Q9H2Z4 AP002414.2-202ENST00000590929 1450 ntBASIC26.29■■□□□ 1.8
NKX2-4Q9H2Z4 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NKX2-4Q9H2Z4 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NKX2-4Q9H2Z4 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
NKX2-4Q9H2Z4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC26.28■■□□□ 1.8
NKX2-4Q9H2Z4 AL136116.3-201ENST00000402907 1138 ntBASIC26.28■■□□□ 1.8
NKX2-4Q9H2Z4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.28■■□□□ 1.8
NKX2-4Q9H2Z4 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NKX2-4Q9H2Z4 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NKX2-4Q9H2Z4 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
NKX2-4Q9H2Z4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
NKX2-4Q9H2Z4 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NKX2-4Q9H2Z4 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NKX2-4Q9H2Z4 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NKX2-4Q9H2Z4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NKX2-4Q9H2Z4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms