Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
RFC4P35249 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
RFC4P35249 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
RFC4P35249 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC31.21■■■□□ 2.59
RFC4P35249 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
RFC4P35249 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
RFC4P35249 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.2■■■□□ 2.58
RFC4P35249 AC008406.3-201ENST00000620001 1374 ntBASIC31.19■■■□□ 2.58
RFC4P35249 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC31.19■■■□□ 2.58
RFC4P35249 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC31.19■■■□□ 2.58
RFC4P35249 CREM-229ENST00000474362 1030 ntTSL 2 BASIC31.19■■■□□ 2.58
RFC4P35249 WHAMMP3-201ENST00000611636 1609 ntBASIC31.19■■■□□ 2.58
RFC4P35249 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
RFC4P35249 RPS2P7-201ENST00000447334 885 ntBASIC31.18■■■□□ 2.58
RFC4P35249 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC31.18■■■□□ 2.58
RFC4P35249 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
RFC4P35249 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
RFC4P35249 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
RFC4P35249 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
RFC4P35249 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
RFC4P35249 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
RFC4P35249 LONRF2P2-201ENST00000439212 571 ntBASIC31.17■■■□□ 2.58
RFC4P35249 GRAMD4P7-201ENST00000578182 1232 ntBASIC31.17■■■□□ 2.58
RFC4P35249 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC31.17■■■□□ 2.58
RFC4P35249 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC31.16■■■□□ 2.58
RFC4P35249 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
RFC4P35249 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
RFC4P35249 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC31.15■■■□□ 2.58
RFC4P35249 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC31.14■■■□□ 2.58
RFC4P35249 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
RFC4P35249 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
RFC4P35249 MIR935-201ENST00000401179 91 ntBASIC31.14■■■□□ 2.58
RFC4P35249 LSM7-203ENST00000585409 512 ntTSL 2 BASIC31.14■■■□□ 2.58
RFC4P35249 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
RFC4P35249 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC31.14■■■□□ 2.58
RFC4P35249 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
RFC4P35249 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
RFC4P35249 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
RFC4P35249 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
RFC4P35249 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC31.12■■■□□ 2.57
RFC4P35249 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
RFC4P35249 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC31.12■■■□□ 2.57
RFC4P35249 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC31.11■■■□□ 2.57
RFC4P35249 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
RFC4P35249 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC31.11■■■□□ 2.57
RFC4P35249 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
RFC4P35249 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.1■■■□□ 2.57
RFC4P35249 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
RFC4P35249 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
RFC4P35249 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
RFC4P35249 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC31.1■■■□□ 2.57
RFC4P35249 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC31.1■■■□□ 2.57
RFC4P35249 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
RFC4P35249 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
RFC4P35249 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
RFC4P35249 KRT125P-201ENST00000546827 989 ntBASIC31.09■■■□□ 2.57
RFC4P35249 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
RFC4P35249 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC31.08■■■□□ 2.57
RFC4P35249 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC31.08■■■□□ 2.57
RFC4P35249 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC31.08■■■□□ 2.57
RFC4P35249 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
RFC4P35249 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
RFC4P35249 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC31.07■■■□□ 2.56
RFC4P35249 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC31.07■■■□□ 2.56
RFC4P35249 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
RFC4P35249 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC31.06■■■□□ 2.56
RFC4P35249 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
RFC4P35249 MIR4787-201ENST00000607364 84 ntBASIC31.06■■■□□ 2.56
RFC4P35249 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
RFC4P35249 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
RFC4P35249 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC31.05■■■□□ 2.56
RFC4P35249 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
RFC4P35249 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
RFC4P35249 PEMT-206ENST00000435340 960 ntTSL 5 BASIC31.04■■■□□ 2.56
RFC4P35249 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC31.04■■■□□ 2.56
RFC4P35249 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
RFC4P35249 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC31.03■■■□□ 2.56
RFC4P35249 BX664725.1-201ENST00000438252 379 ntBASIC31.03■■■□□ 2.56
RFC4P35249 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
RFC4P35249 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
RFC4P35249 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
RFC4P35249 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC31.02■■■□□ 2.56
RFC4P35249 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC31.02■■■□□ 2.56
RFC4P35249 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
RFC4P35249 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
RFC4P35249 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC31.01■■■□□ 2.55
RFC4P35249 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC31■■■□□ 2.55
RFC4P35249 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC31■■■□□ 2.55
RFC4P35249 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC31■■■□□ 2.55
RFC4P35249 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC31■■■□□ 2.55
RFC4P35249 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC30.99■■■□□ 2.55
RFC4P35249 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
RFC4P35249 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
RFC4P35249 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC30.99■■■□□ 2.55
RFC4P35249 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC30.98■■■□□ 2.55
RFC4P35249 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
RFC4P35249 UNC93B8-201ENST00000511903 705 ntBASIC30.98■■■□□ 2.55
RFC4P35249 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
RFC4P35249 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
RFC4P35249 AC022616.5-201ENST00000518796 181 ntBASIC30.97■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms