Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HLA-DMBP28068 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DMBP28068 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DMBP28068 MIR219A2-201ENST00000608502 1504 ntBASIC18.47■□□□□ 0.55
HLA-DMBP28068 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DMBP28068 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DMBP28068 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DMBP28068 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
HLA-DMBP28068 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DMBP28068 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DMBP28068 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
HLA-DMBP28068 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DMBP28068 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DMBP28068 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DMBP28068 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DMBP28068 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DMBP28068 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
HLA-DMBP28068 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DMBP28068 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DMBP28068 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DMBP28068 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DMBP28068 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DMBP28068 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
HLA-DMBP28068 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC18.44■□□□□ 0.54
HLA-DMBP28068 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
HLA-DMBP28068 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HLA-DMBP28068 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HLA-DMBP28068 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HLA-DMBP28068 MIR4449-201ENST00000578365 66 ntBASIC18.44■□□□□ 0.54
HLA-DMBP28068 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
HLA-DMBP28068 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HLA-DMBP28068 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DMBP28068 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DMBP28068 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DMBP28068 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DMBP28068 HES6-205ENST00000409356 528 ntTSL 2 BASIC18.43■□□□□ 0.54
HLA-DMBP28068 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC18.43■□□□□ 0.54
HLA-DMBP28068 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DMBP28068 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DMBP28068 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DMBP28068 CEBPA-AS1-201ENST00000592982 2198 ntBASIC18.42■□□□□ 0.54
HLA-DMBP28068 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC18.42■□□□□ 0.54
HLA-DMBP28068 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC18.42■□□□□ 0.54
HLA-DMBP28068 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DMBP28068 AC008813.1-201ENST00000536597 885 ntBASIC18.42■□□□□ 0.54
HLA-DMBP28068 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DMBP28068 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DMBP28068 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DMBP28068 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DMBP28068 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DMBP28068 PKM-204ENST00000449901 2526 ntTSL 2 BASIC18.41■□□□□ 0.54
HLA-DMBP28068 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DMBP28068 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DMBP28068 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
HLA-DMBP28068 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DMBP28068 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DMBP28068 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
HLA-DMBP28068 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
HLA-DMBP28068 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DMBP28068 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC18.4■□□□□ 0.54
HLA-DMBP28068 CHST11-203ENST00000547956 936 ntTSL 2 BASIC18.4■□□□□ 0.54
HLA-DMBP28068 AC148477.6-201ENST00000623746 465 ntBASIC18.4■□□□□ 0.54
HLA-DMBP28068 AC010501.1-201ENST00000606270 1962 ntBASIC18.4■□□□□ 0.54
HLA-DMBP28068 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
HLA-DMBP28068 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DMBP28068 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
HLA-DMBP28068 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
HLA-DMBP28068 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DMBP28068 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
HLA-DMBP28068 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HLA-DMBP28068 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
HLA-DMBP28068 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
HLA-DMBP28068 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DMBP28068 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DMBP28068 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DMBP28068 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DMBP28068 AL359258.2-201ENST00000564063 1566 ntBASIC18.38■□□□□ 0.53
HLA-DMBP28068 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DMBP28068 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC18.38■□□□□ 0.53
HLA-DMBP28068 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC18.38■□□□□ 0.53
HLA-DMBP28068 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DMBP28068 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DMBP28068 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DMBP28068 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DMBP28068 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DMBP28068 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DMBP28068 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DMBP28068 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DMBP28068 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DMBP28068 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DMBP28068 METRNL-202ENST00000570778 967 ntTSL 5 BASIC18.36■□□□□ 0.53
HLA-DMBP28068 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC18.36■□□□□ 0.53
HLA-DMBP28068 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DMBP28068 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC18.36■□□□□ 0.53
HLA-DMBP28068 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
HLA-DMBP28068 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DMBP28068 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
HLA-DMBP28068 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DMBP28068 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DMBP28068 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms