Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC22.74■■□□□ 1.23
HMGN4O00479 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
HMGN4O00479 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
HMGN4O00479 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC22.74■■□□□ 1.23
HMGN4O00479 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
HMGN4O00479 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
HMGN4O00479 AL359504.2-201ENST00000605506 1601 ntBASIC22.73■■□□□ 1.23
HMGN4O00479 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
HMGN4O00479 AC016575.1-201ENST00000607026 382 ntBASIC22.73■■□□□ 1.23
HMGN4O00479 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
HMGN4O00479 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
HMGN4O00479 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.72■■□□□ 1.23
HMGN4O00479 AC010501.1-201ENST00000606270 1962 ntBASIC22.72■■□□□ 1.23
HMGN4O00479 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
HMGN4O00479 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC22.72■■□□□ 1.23
HMGN4O00479 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
HMGN4O00479 METRNL-202ENST00000570778 967 ntTSL 5 BASIC22.71■■□□□ 1.23
HMGN4O00479 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
HMGN4O00479 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC22.7■■□□□ 1.22
HMGN4O00479 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
HMGN4O00479 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
HMGN4O00479 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
HMGN4O00479 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
HMGN4O00479 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
HMGN4O00479 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
HMGN4O00479 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
HMGN4O00479 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
HMGN4O00479 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
HMGN4O00479 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
HMGN4O00479 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
HMGN4O00479 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
HMGN4O00479 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
HMGN4O00479 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
HMGN4O00479 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.68■■□□□ 1.22
HMGN4O00479 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
HMGN4O00479 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
HMGN4O00479 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
HMGN4O00479 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HMGN4O00479 AC135731.1-201ENST00000569415 2548 ntBASIC22.67■■□□□ 1.22
HMGN4O00479 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
HMGN4O00479 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
HMGN4O00479 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
HMGN4O00479 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.65■■□□□ 1.22
HMGN4O00479 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HMGN4O00479 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
HMGN4O00479 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGN4O00479 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
HMGN4O00479 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC22.64■■□□□ 1.22
HMGN4O00479 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
HMGN4O00479 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC22.64■■□□□ 1.21
HMGN4O00479 AC126177.7-201ENST00000547904 679 ntBASIC22.64■■□□□ 1.21
HMGN4O00479 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC22.64■■□□□ 1.21
HMGN4O00479 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
HMGN4O00479 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC22.64■■□□□ 1.21
HMGN4O00479 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HMGN4O00479 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
HMGN4O00479 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
HMGN4O00479 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HMGN4O00479 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HMGN4O00479 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
HMGN4O00479 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
HMGN4O00479 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGN4O00479 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGN4O00479 MIR7108-201ENST00000614319 87 ntBASIC22.62■■□□□ 1.21
HMGN4O00479 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC22.62■■□□□ 1.21
HMGN4O00479 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HMGN4O00479 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
HMGN4O00479 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.61■■□□□ 1.21
HMGN4O00479 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
HMGN4O00479 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
HMGN4O00479 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC22.61■■□□□ 1.21
HMGN4O00479 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
HMGN4O00479 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
HMGN4O00479 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC22.6■■□□□ 1.21
HMGN4O00479 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC22.6■■□□□ 1.21
HMGN4O00479 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
HMGN4O00479 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC22.6■■□□□ 1.21
HMGN4O00479 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC22.6■■□□□ 1.21
HMGN4O00479 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
HMGN4O00479 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
HMGN4O00479 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
HMGN4O00479 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGN4O00479 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
HMGN4O00479 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGN4O00479 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC22.59■■□□□ 1.21
HMGN4O00479 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
HMGN4O00479 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGN4O00479 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGN4O00479 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.59■■□□□ 1.21
HMGN4O00479 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGN4O00479 AC096887.2-201ENST00000623443 1957 ntBASIC22.58■■□□□ 1.21
HMGN4O00479 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HMGN4O00479 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
HMGN4O00479 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
HMGN4O00479 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.58■■□□□ 1.2
HMGN4O00479 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HMGN4O00479 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HMGN4O00479 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HMGN4O00479 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HMGN4O00479 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms