Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SMCHD1A6NHR9 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.22■■■□□ 2.11
SMCHD1A6NHR9 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SMCHD1A6NHR9 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC28.21■■■□□ 2.11
SMCHD1A6NHR9 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC28.21■■■□□ 2.11
SMCHD1A6NHR9 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
SMCHD1A6NHR9 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC28.21■■■□□ 2.11
SMCHD1A6NHR9 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SMCHD1A6NHR9 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
SMCHD1A6NHR9 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
SMCHD1A6NHR9 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC28.19■■■□□ 2.1
SMCHD1A6NHR9 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
SMCHD1A6NHR9 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC28.19■■■□□ 2.1
SMCHD1A6NHR9 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
SMCHD1A6NHR9 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SMCHD1A6NHR9 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC28.18■■■□□ 2.1
SMCHD1A6NHR9 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
SMCHD1A6NHR9 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
SMCHD1A6NHR9 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC28.18■■■□□ 2.1
SMCHD1A6NHR9 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC28.17■■■□□ 2.1
SMCHD1A6NHR9 TRIR-205ENST00000592273 783 ntTSL 3 BASIC28.16■■■□□ 2.1
SMCHD1A6NHR9 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
SMCHD1A6NHR9 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SMCHD1A6NHR9 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SMCHD1A6NHR9 PVT1_1.1-201ENST00000615125 194 ntBASIC28.16■■■□□ 2.1
SMCHD1A6NHR9 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SMCHD1A6NHR9 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC28.15■■■□□ 2.1
SMCHD1A6NHR9 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
SMCHD1A6NHR9 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
SMCHD1A6NHR9 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC28.15■■■□□ 2.1
SMCHD1A6NHR9 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC28.14■■■□□ 2.1
SMCHD1A6NHR9 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
SMCHD1A6NHR9 AC009299.2-201ENST00000482477 511 ntBASIC28.14■■■□□ 2.09
SMCHD1A6NHR9 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC28.14■■■□□ 2.09
SMCHD1A6NHR9 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC28.13■■■□□ 2.09
SMCHD1A6NHR9 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SMCHD1A6NHR9 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SMCHD1A6NHR9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC28.13■■■□□ 2.09
SMCHD1A6NHR9 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
SMCHD1A6NHR9 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SMCHD1A6NHR9 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC28.11■■■□□ 2.09
SMCHD1A6NHR9 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC28.11■■■□□ 2.09
SMCHD1A6NHR9 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SMCHD1A6NHR9 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC28.11■■■□□ 2.09
SMCHD1A6NHR9 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SMCHD1A6NHR9 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SMCHD1A6NHR9 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC28.1■■■□□ 2.09
SMCHD1A6NHR9 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC28.1■■■□□ 2.09
SMCHD1A6NHR9 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
SMCHD1A6NHR9 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC28.09■■■□□ 2.09
SMCHD1A6NHR9 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC28.09■■■□□ 2.09
SMCHD1A6NHR9 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
SMCHD1A6NHR9 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SMCHD1A6NHR9 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SMCHD1A6NHR9 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SMCHD1A6NHR9 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC28.08■■■□□ 2.09
SMCHD1A6NHR9 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SMCHD1A6NHR9 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SMCHD1A6NHR9 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SMCHD1A6NHR9 AL592295.1-201ENST00000400984 884 ntBASIC28.08■■■□□ 2.08
SMCHD1A6NHR9 MIR6765-201ENST00000614092 87 ntBASIC28.08■■■□□ 2.08
SMCHD1A6NHR9 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC28.07■■■□□ 2.08
SMCHD1A6NHR9 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
SMCHD1A6NHR9 AC142086.6-201ENST00000621154 1765 ntBASIC28.07■■■□□ 2.08
SMCHD1A6NHR9 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
SMCHD1A6NHR9 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC28.07■■■□□ 2.08
SMCHD1A6NHR9 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC28.07■■■□□ 2.08
SMCHD1A6NHR9 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC28.07■■■□□ 2.08
SMCHD1A6NHR9 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SMCHD1A6NHR9 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC28.07■■■□□ 2.08
SMCHD1A6NHR9 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SMCHD1A6NHR9 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
SMCHD1A6NHR9 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
SMCHD1A6NHR9 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SMCHD1A6NHR9 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SMCHD1A6NHR9 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SMCHD1A6NHR9 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC28.05■■■□□ 2.08
SMCHD1A6NHR9 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC28.05■■■□□ 2.08
SMCHD1A6NHR9 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
SMCHD1A6NHR9 AC010980.1-201ENST00000587192 1142 ntBASIC28.05■■■□□ 2.08
SMCHD1A6NHR9 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
SMCHD1A6NHR9 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
SMCHD1A6NHR9 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC28.04■■■□□ 2.08
SMCHD1A6NHR9 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SMCHD1A6NHR9 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC28.03■■■□□ 2.08
SMCHD1A6NHR9 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC28.03■■■□□ 2.08
SMCHD1A6NHR9 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SMCHD1A6NHR9 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SMCHD1A6NHR9 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
SMCHD1A6NHR9 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC28.02■■■□□ 2.08
SMCHD1A6NHR9 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC28.02■■■□□ 2.08
SMCHD1A6NHR9 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SMCHD1A6NHR9 IDNK-203ENST00000405990 629 ntTSL 2 BASIC28.02■■■□□ 2.08
SMCHD1A6NHR9 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC28.02■■■□□ 2.08
SMCHD1A6NHR9 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC28.02■■■□□ 2.08
SMCHD1A6NHR9 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SMCHD1A6NHR9 KRT8P33-201ENST00000508125 1423 ntBASIC28.01■■■□□ 2.07
SMCHD1A6NHR9 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC28.01■■■□□ 2.07
SMCHD1A6NHR9 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC28.01■■■□□ 2.07
SMCHD1A6NHR9 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC28.01■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms