Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 AC103724.3-201ENST00000564481 992 ntBASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 AC019171.1-201ENST00000601251 1056 ntBASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHGA1Q9Y5H4 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHGA1Q9Y5H4 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHGA1Q9Y5H4 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC23.83■■□□□ 1.41
PCDHGA1Q9Y5H4 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC23.83■■□□□ 1.41
PCDHGA1Q9Y5H4 AP002414.2-202ENST00000590929 1450 ntBASIC23.82■■□□□ 1.4
PCDHGA1Q9Y5H4 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHGA1Q9Y5H4 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHGA1Q9Y5H4 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.82■■□□□ 1.4
PCDHGA1Q9Y5H4 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHGA1Q9Y5H4 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHGA1Q9Y5H4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.81■■□□□ 1.4
PCDHGA1Q9Y5H4 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHGA1Q9Y5H4 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHGA1Q9Y5H4 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.8■■□□□ 1.4
PCDHGA1Q9Y5H4 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHGA1Q9Y5H4 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHGA1Q9Y5H4 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHGA1Q9Y5H4 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
PCDHGA1Q9Y5H4 AL356441.2-201ENST00000443009 864 ntBASIC23.8■■□□□ 1.4
PCDHGA1Q9Y5H4 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
PCDHGA1Q9Y5H4 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.8■■□□□ 1.4
PCDHGA1Q9Y5H4 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
PCDHGA1Q9Y5H4 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHGA1Q9Y5H4 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC23.79■■□□□ 1.4
PCDHGA1Q9Y5H4 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHGA1Q9Y5H4 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHGA1Q9Y5H4 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHGA1Q9Y5H4 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
PCDHGA1Q9Y5H4 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHGA1Q9Y5H4 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.78■■□□□ 1.4
PCDHGA1Q9Y5H4 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCDHGA1Q9Y5H4 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC23.76■■□□□ 1.39
PCDHGA1Q9Y5H4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHGA1Q9Y5H4 AL359504.2-201ENST00000605506 1601 ntBASIC23.76■■□□□ 1.39
PCDHGA1Q9Y5H4 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
PCDHGA1Q9Y5H4 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC23.75■■□□□ 1.39
PCDHGA1Q9Y5H4 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHGA1Q9Y5H4 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHGA1Q9Y5H4 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHGA1Q9Y5H4 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHGA1Q9Y5H4 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC23.75■■□□□ 1.39
PCDHGA1Q9Y5H4 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC23.75■■□□□ 1.39
PCDHGA1Q9Y5H4 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHGA1Q9Y5H4 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
PCDHGA1Q9Y5H4 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
PCDHGA1Q9Y5H4 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHGA1Q9Y5H4 Z92544.1-202ENST00000571933 1220 ntBASIC23.73■■□□□ 1.39
PCDHGA1Q9Y5H4 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
PCDHGA1Q9Y5H4 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHGA1Q9Y5H4 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
PCDHGA1Q9Y5H4 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.72■■□□□ 1.39
PCDHGA1Q9Y5H4 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC23.72■■□□□ 1.39
PCDHGA1Q9Y5H4 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.72■■□□□ 1.39
PCDHGA1Q9Y5H4 AC087393.1-201ENST00000582896 145 ntBASIC23.72■■□□□ 1.39
PCDHGA1Q9Y5H4 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC23.72■■□□□ 1.39
PCDHGA1Q9Y5H4 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC23.72■■□□□ 1.39
PCDHGA1Q9Y5H4 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC23.71■■□□□ 1.39
PCDHGA1Q9Y5H4 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHGA1Q9Y5H4 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHGA1Q9Y5H4 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHGA1Q9Y5H4 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHGA1Q9Y5H4 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHGA1Q9Y5H4 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC23.71■■□□□ 1.39
PCDHGA1Q9Y5H4 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC23.71■■□□□ 1.39
PCDHGA1Q9Y5H4 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHGA1Q9Y5H4 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHGA1Q9Y5H4 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHGA1Q9Y5H4 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHGA1Q9Y5H4 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHGA1Q9Y5H4 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC23.69■■□□□ 1.38
PCDHGA1Q9Y5H4 AC239859.2-201ENST00000444165 318 ntBASIC23.69■■□□□ 1.38
PCDHGA1Q9Y5H4 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.69■■□□□ 1.38
PCDHGA1Q9Y5H4 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.69■■□□□ 1.38
PCDHGA1Q9Y5H4 ABCB10P3-201ENST00000561950 2166 ntBASIC23.69■■□□□ 1.38
PCDHGA1Q9Y5H4 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC23.69■■□□□ 1.38
PCDHGA1Q9Y5H4 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC23.68■■□□□ 1.38
PCDHGA1Q9Y5H4 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.68■■□□□ 1.38
PCDHGA1Q9Y5H4 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC23.68■■□□□ 1.38
PCDHGA1Q9Y5H4 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
PCDHGA1Q9Y5H4 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC23.68■■□□□ 1.38
PCDHGA1Q9Y5H4 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHGA1Q9Y5H4 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC23.68■■□□□ 1.38
PCDHGA1Q9Y5H4 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
PCDHGA1Q9Y5H4 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHGA1Q9Y5H4 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms