Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
CHMP1AQ9HD42 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP1AQ9HD42 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
CHMP1AQ9HD42 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CHMP1AQ9HD42 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP1AQ9HD42 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP1AQ9HD42 NRG1-221ENST00000614767 762 ntTSL 5 BASIC20.84■□□□□ 0.93
CHMP1AQ9HD42 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC20.84■□□□□ 0.93
CHMP1AQ9HD42 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP1AQ9HD42 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
CHMP1AQ9HD42 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHMP1AQ9HD42 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
CHMP1AQ9HD42 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.83■□□□□ 0.93
CHMP1AQ9HD42 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHMP1AQ9HD42 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.83■□□□□ 0.92
CHMP1AQ9HD42 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHMP1AQ9HD42 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP1AQ9HD42 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP1AQ9HD42 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CHMP1AQ9HD42 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP1AQ9HD42 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP1AQ9HD42 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP1AQ9HD42 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP1AQ9HD42 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.82■□□□□ 0.92
CHMP1AQ9HD42 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP1AQ9HD42 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP1AQ9HD42 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP1AQ9HD42 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.82■□□□□ 0.92
CHMP1AQ9HD42 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC20.81■□□□□ 0.92
CHMP1AQ9HD42 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP1AQ9HD42 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CHMP1AQ9HD42 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP1AQ9HD42 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP1AQ9HD42 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.81■□□□□ 0.92
CHMP1AQ9HD42 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP1AQ9HD42 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC20.8■□□□□ 0.92
CHMP1AQ9HD42 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CHMP1AQ9HD42 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP1AQ9HD42 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.79■□□□□ 0.92
CHMP1AQ9HD42 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP1AQ9HD42 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CHMP1AQ9HD42 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP1AQ9HD42 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP1AQ9HD42 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
CHMP1AQ9HD42 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP1AQ9HD42 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP1AQ9HD42 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP1AQ9HD42 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP1AQ9HD42 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.77■□□□□ 0.92
CHMP1AQ9HD42 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP1AQ9HD42 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.77■□□□□ 0.92
CHMP1AQ9HD42 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.77■□□□□ 0.92
CHMP1AQ9HD42 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CHMP1AQ9HD42 DUX4L29-201ENST00000425409 679 ntBASIC20.77■□□□□ 0.92
CHMP1AQ9HD42 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP1AQ9HD42 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.77■□□□□ 0.92
CHMP1AQ9HD42 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP1AQ9HD42 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.77■□□□□ 0.92
CHMP1AQ9HD42 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP1AQ9HD42 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CHMP1AQ9HD42 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP1AQ9HD42 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.76■□□□□ 0.91
CHMP1AQ9HD42 AC021231.2-201ENST00000594613 730 ntBASIC20.76■□□□□ 0.91
CHMP1AQ9HD42 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP1AQ9HD42 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.76■□□□□ 0.91
CHMP1AQ9HD42 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CHMP1AQ9HD42 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP1AQ9HD42 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP1AQ9HD42 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP1AQ9HD42 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP1AQ9HD42 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP1AQ9HD42 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP1AQ9HD42 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.75■□□□□ 0.91
CHMP1AQ9HD42 AC092803.2-201ENST00000564287 1899 ntBASIC20.75■□□□□ 0.91
CHMP1AQ9HD42 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP1AQ9HD42 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
CHMP1AQ9HD42 WHAMMP3-201ENST00000611636 1609 ntBASIC20.75■□□□□ 0.91
CHMP1AQ9HD42 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.74■□□□□ 0.91
CHMP1AQ9HD42 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP1AQ9HD42 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP1AQ9HD42 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP1AQ9HD42 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP1AQ9HD42 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP1AQ9HD42 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.73■□□□□ 0.91
CHMP1AQ9HD42 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC20.73■□□□□ 0.91
CHMP1AQ9HD42 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CHMP1AQ9HD42 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP1AQ9HD42 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP1AQ9HD42 AC142472.1-201ENST00000612013 1741 ntBASIC20.73■□□□□ 0.91
CHMP1AQ9HD42 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP1AQ9HD42 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.72■□□□□ 0.91
CHMP1AQ9HD42 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP1AQ9HD42 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP1AQ9HD42 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP1AQ9HD42 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CHMP1AQ9HD42 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP1AQ9HD42 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP1AQ9HD42 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP1AQ9HD42 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP1AQ9HD42 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms