Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
NKX2-4Q9H2Z4 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
NKX2-4Q9H2Z4 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC26.66■■□□□ 1.86
NKX2-4Q9H2Z4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC26.66■■□□□ 1.86
NKX2-4Q9H2Z4 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC26.66■■□□□ 1.86
NKX2-4Q9H2Z4 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
NKX2-4Q9H2Z4 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
NKX2-4Q9H2Z4 AP004833.2-201ENST00000532228 1454 ntBASIC26.65■■□□□ 1.86
NKX2-4Q9H2Z4 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
NKX2-4Q9H2Z4 MIR638-201ENST00000385237 100 ntBASIC26.64■■□□□ 1.86
NKX2-4Q9H2Z4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC26.64■■□□□ 1.86
NKX2-4Q9H2Z4 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC26.64■■□□□ 1.86
NKX2-4Q9H2Z4 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
NKX2-4Q9H2Z4 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
NKX2-4Q9H2Z4 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
NKX2-4Q9H2Z4 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC26.63■■□□□ 1.85
NKX2-4Q9H2Z4 AC019171.1-201ENST00000601251 1056 ntBASIC26.63■■□□□ 1.85
NKX2-4Q9H2Z4 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC26.62■■□□□ 1.85
NKX2-4Q9H2Z4 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
NKX2-4Q9H2Z4 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
NKX2-4Q9H2Z4 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.62■■□□□ 1.85
NKX2-4Q9H2Z4 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
NKX2-4Q9H2Z4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
NKX2-4Q9H2Z4 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC26.61■■□□□ 1.85
NKX2-4Q9H2Z4 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.6■■□□□ 1.85
NKX2-4Q9H2Z4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NKX2-4Q9H2Z4 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
NKX2-4Q9H2Z4 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NKX2-4Q9H2Z4 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC26.59■■□□□ 1.85
NKX2-4Q9H2Z4 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
NKX2-4Q9H2Z4 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
NKX2-4Q9H2Z4 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
NKX2-4Q9H2Z4 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
NKX2-4Q9H2Z4 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
NKX2-4Q9H2Z4 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
NKX2-4Q9H2Z4 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
NKX2-4Q9H2Z4 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
NKX2-4Q9H2Z4 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
NKX2-4Q9H2Z4 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.84
NKX2-4Q9H2Z4 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC26.57■■□□□ 1.84
NKX2-4Q9H2Z4 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NKX2-4Q9H2Z4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC26.56■■□□□ 1.84
NKX2-4Q9H2Z4 KRT125P-201ENST00000546827 989 ntBASIC26.56■■□□□ 1.84
NKX2-4Q9H2Z4 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
NKX2-4Q9H2Z4 MIR4787-201ENST00000607364 84 ntBASIC26.56■■□□□ 1.84
NKX2-4Q9H2Z4 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
NKX2-4Q9H2Z4 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
NKX2-4Q9H2Z4 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
NKX2-4Q9H2Z4 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC26.55■■□□□ 1.84
NKX2-4Q9H2Z4 AC087393.1-201ENST00000582896 145 ntBASIC26.55■■□□□ 1.84
NKX2-4Q9H2Z4 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC26.55■■□□□ 1.84
NKX2-4Q9H2Z4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
NKX2-4Q9H2Z4 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
NKX2-4Q9H2Z4 UNC93B8-201ENST00000511903 705 ntBASIC26.54■■□□□ 1.84
NKX2-4Q9H2Z4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC26.54■■□□□ 1.84
NKX2-4Q9H2Z4 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
NKX2-4Q9H2Z4 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NKX2-4Q9H2Z4 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
NKX2-4Q9H2Z4 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC26.53■■□□□ 1.84
NKX2-4Q9H2Z4 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NKX2-4Q9H2Z4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.53■■□□□ 1.84
NKX2-4Q9H2Z4 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
NKX2-4Q9H2Z4 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NKX2-4Q9H2Z4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
NKX2-4Q9H2Z4 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
NKX2-4Q9H2Z4 LONRF2P2-201ENST00000439212 571 ntBASIC26.52■■□□□ 1.84
NKX2-4Q9H2Z4 AL359504.2-201ENST00000605506 1601 ntBASIC26.52■■□□□ 1.84
NKX2-4Q9H2Z4 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NKX2-4Q9H2Z4 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
NKX2-4Q9H2Z4 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NKX2-4Q9H2Z4 KRT16P3-201ENST00000439127 1283 ntBASIC26.51■■□□□ 1.83
NKX2-4Q9H2Z4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC26.51■■□□□ 1.83
NKX2-4Q9H2Z4 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.51■■□□□ 1.83
NKX2-4Q9H2Z4 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.51■■□□□ 1.83
NKX2-4Q9H2Z4 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.51■■□□□ 1.83
NKX2-4Q9H2Z4 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.5■■□□□ 1.83
NKX2-4Q9H2Z4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NKX2-4Q9H2Z4 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
NKX2-4Q9H2Z4 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC26.5■■□□□ 1.83
NKX2-4Q9H2Z4 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
NKX2-4Q9H2Z4 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NKX2-4Q9H2Z4 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NKX2-4Q9H2Z4 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.49■■□□□ 1.83
NKX2-4Q9H2Z4 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NKX2-4Q9H2Z4 BX664725.1-201ENST00000438252 379 ntBASIC26.48■■□□□ 1.83
NKX2-4Q9H2Z4 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.48■■□□□ 1.83
NKX2-4Q9H2Z4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC26.48■■□□□ 1.83
NKX2-4Q9H2Z4 AL139246.5-201ENST00000606645 996 ntBASIC26.48■■□□□ 1.83
NKX2-4Q9H2Z4 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NKX2-4Q9H2Z4 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
NKX2-4Q9H2Z4 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC26.47■■□□□ 1.83
NKX2-4Q9H2Z4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC26.47■■□□□ 1.83
NKX2-4Q9H2Z4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
NKX2-4Q9H2Z4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.47■■□□□ 1.83
NKX2-4Q9H2Z4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
NKX2-4Q9H2Z4 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC26.46■■□□□ 1.83
NKX2-4Q9H2Z4 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC26.46■■□□□ 1.83
NKX2-4Q9H2Z4 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
NKX2-4Q9H2Z4 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC26.46■■□□□ 1.83
NKX2-4Q9H2Z4 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms