Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
ZNF560Q96MR9 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
ZNF560Q96MR9 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
ZNF560Q96MR9 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
ZNF560Q96MR9 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC26.37■■□□□ 1.81
ZNF560Q96MR9 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC26.37■■□□□ 1.81
ZNF560Q96MR9 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
ZNF560Q96MR9 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
ZNF560Q96MR9 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
ZNF560Q96MR9 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
ZNF560Q96MR9 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC26.36■■□□□ 1.81
ZNF560Q96MR9 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
ZNF560Q96MR9 AC093536.1-201ENST00000569153 554 ntBASIC26.36■■□□□ 1.81
ZNF560Q96MR9 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
ZNF560Q96MR9 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
ZNF560Q96MR9 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
ZNF560Q96MR9 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC26.34■■□□□ 1.81
ZNF560Q96MR9 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
ZNF560Q96MR9 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
ZNF560Q96MR9 HES4-204ENST00000484667 667 ntTSL 3 BASIC26.34■■□□□ 1.81
ZNF560Q96MR9 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
ZNF560Q96MR9 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
ZNF560Q96MR9 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
ZNF560Q96MR9 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
ZNF560Q96MR9 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC26.33■■□□□ 1.81
ZNF560Q96MR9 AC009831.1-201ENST00000580420 1582 ntBASIC26.33■■□□□ 1.81
ZNF560Q96MR9 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
ZNF560Q96MR9 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
ZNF560Q96MR9 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
ZNF560Q96MR9 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
ZNF560Q96MR9 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC26.33■■□□□ 1.81
ZNF560Q96MR9 AC142472.1-201ENST00000612013 1741 ntBASIC26.33■■□□□ 1.81
ZNF560Q96MR9 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26.33■■□□□ 1.81
ZNF560Q96MR9 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
ZNF560Q96MR9 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
ZNF560Q96MR9 AC026202.3-201ENST00000600805 1127 ntBASIC26.32■■□□□ 1.8
ZNF560Q96MR9 AC133552.2-201ENST00000619106 1032 ntBASIC26.32■■□□□ 1.8
ZNF560Q96MR9 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
ZNF560Q96MR9 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
ZNF560Q96MR9 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC26.31■■□□□ 1.8
ZNF560Q96MR9 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
ZNF560Q96MR9 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
ZNF560Q96MR9 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
ZNF560Q96MR9 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
ZNF560Q96MR9 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
ZNF560Q96MR9 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC26.3■■□□□ 1.8
ZNF560Q96MR9 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
ZNF560Q96MR9 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC26.29■■□□□ 1.8
ZNF560Q96MR9 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
ZNF560Q96MR9 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
ZNF560Q96MR9 AP004609.3-201ENST00000610705 1884 ntBASIC26.28■■□□□ 1.8
ZNF560Q96MR9 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
ZNF560Q96MR9 RAP2CP1-202ENST00000605179 643 ntBASIC26.28■■□□□ 1.8
ZNF560Q96MR9 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
ZNF560Q96MR9 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
ZNF560Q96MR9 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
ZNF560Q96MR9 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
ZNF560Q96MR9 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
ZNF560Q96MR9 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
ZNF560Q96MR9 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
ZNF560Q96MR9 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
ZNF560Q96MR9 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC26.26■■□□□ 1.79
ZNF560Q96MR9 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
ZNF560Q96MR9 KRT18P60-201ENST00000312876 1297 ntBASIC26.26■■□□□ 1.79
ZNF560Q96MR9 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
ZNF560Q96MR9 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
ZNF560Q96MR9 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC26.26■■□□□ 1.79
ZNF560Q96MR9 AL592293.1-201ENST00000502889 1188 ntBASIC26.25■■□□□ 1.79
ZNF560Q96MR9 AC012354.3-201ENST00000623734 483 ntBASIC26.25■■□□□ 1.79
ZNF560Q96MR9 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
ZNF560Q96MR9 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC26.24■■□□□ 1.79
ZNF560Q96MR9 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC26.24■■□□□ 1.79
ZNF560Q96MR9 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC26.24■■□□□ 1.79
ZNF560Q96MR9 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
ZNF560Q96MR9 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC26.24■■□□□ 1.79
ZNF560Q96MR9 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC26.24■■□□□ 1.79
ZNF560Q96MR9 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
ZNF560Q96MR9 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
ZNF560Q96MR9 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
ZNF560Q96MR9 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
ZNF560Q96MR9 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC26.23■■□□□ 1.79
ZNF560Q96MR9 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC26.23■■□□□ 1.79
ZNF560Q96MR9 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
ZNF560Q96MR9 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
ZNF560Q96MR9 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.21■■□□□ 1.79
ZNF560Q96MR9 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
ZNF560Q96MR9 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
ZNF560Q96MR9 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC26.21■■□□□ 1.79
ZNF560Q96MR9 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC26.21■■□□□ 1.79
ZNF560Q96MR9 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
ZNF560Q96MR9 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
ZNF560Q96MR9 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.78
ZNF560Q96MR9 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC26.2■■□□□ 1.78
ZNF560Q96MR9 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
ZNF560Q96MR9 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
ZNF560Q96MR9 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC26.19■■□□□ 1.78
ZNF560Q96MR9 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
ZNF560Q96MR9 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
ZNF560Q96MR9 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
ZNF560Q96MR9 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms