Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC24.12■■□□□ 1.45
LMX1AQ8TE12 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LMX1AQ8TE12 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
LMX1AQ8TE12 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
LMX1AQ8TE12 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.1■■□□□ 1.45
LMX1AQ8TE12 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC24.1■■□□□ 1.45
LMX1AQ8TE12 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
LMX1AQ8TE12 AC018755.3-202ENST00000596210 929 ntBASIC24.1■■□□□ 1.45
LMX1AQ8TE12 MIR6765-201ENST00000614092 87 ntBASIC24.1■■□□□ 1.45
LMX1AQ8TE12 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
LMX1AQ8TE12 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
LMX1AQ8TE12 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.1■■□□□ 1.45
LMX1AQ8TE12 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
LMX1AQ8TE12 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC24.1■■□□□ 1.45
LMX1AQ8TE12 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC24.09■■□□□ 1.45
LMX1AQ8TE12 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC24.09■■□□□ 1.45
LMX1AQ8TE12 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
LMX1AQ8TE12 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.45
LMX1AQ8TE12 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
LMX1AQ8TE12 AC139795.1-202ENST00000500444 432 ntBASIC24.08■■□□□ 1.45
LMX1AQ8TE12 AC010980.1-201ENST00000587192 1142 ntBASIC24.08■■□□□ 1.45
LMX1AQ8TE12 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
LMX1AQ8TE12 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
LMX1AQ8TE12 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
LMX1AQ8TE12 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC24.07■■□□□ 1.44
LMX1AQ8TE12 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24.07■■□□□ 1.44
LMX1AQ8TE12 DRD5P2-201ENST00000421395 2012 ntBASIC24.06■■□□□ 1.44
LMX1AQ8TE12 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.06■■□□□ 1.44
LMX1AQ8TE12 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC24.06■■□□□ 1.44
LMX1AQ8TE12 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC24.06■■□□□ 1.44
LMX1AQ8TE12 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.06■■□□□ 1.44
LMX1AQ8TE12 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
LMX1AQ8TE12 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC24.06■■□□□ 1.44
LMX1AQ8TE12 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
LMX1AQ8TE12 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC24.05■■□□□ 1.44
LMX1AQ8TE12 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
LMX1AQ8TE12 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC24.05■■□□□ 1.44
LMX1AQ8TE12 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
LMX1AQ8TE12 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24.04■■□□□ 1.44
LMX1AQ8TE12 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC24.04■■□□□ 1.44
LMX1AQ8TE12 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24.04■■□□□ 1.44
LMX1AQ8TE12 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.04■■□□□ 1.44
LMX1AQ8TE12 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
LMX1AQ8TE12 HYI-210ENST00000486909 905 ntTSL 5 BASIC24.03■■□□□ 1.44
LMX1AQ8TE12 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC24.03■■□□□ 1.44
LMX1AQ8TE12 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC24.03■■□□□ 1.44
LMX1AQ8TE12 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
LMX1AQ8TE12 AC074183.2-201ENST00000623112 922 ntBASIC24.03■■□□□ 1.44
LMX1AQ8TE12 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
LMX1AQ8TE12 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
LMX1AQ8TE12 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC24.02■■□□□ 1.44
LMX1AQ8TE12 KRT8P33-201ENST00000508125 1423 ntBASIC24.02■■□□□ 1.44
LMX1AQ8TE12 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
LMX1AQ8TE12 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
LMX1AQ8TE12 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
LMX1AQ8TE12 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC24.02■■□□□ 1.44
LMX1AQ8TE12 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
LMX1AQ8TE12 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
LMX1AQ8TE12 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC24.01■■□□□ 1.43
LMX1AQ8TE12 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
LMX1AQ8TE12 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
LMX1AQ8TE12 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC24■■□□□ 1.43
LMX1AQ8TE12 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24■■□□□ 1.43
LMX1AQ8TE12 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC24■■□□□ 1.43
LMX1AQ8TE12 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
LMX1AQ8TE12 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC24■■□□□ 1.43
LMX1AQ8TE12 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC24■■□□□ 1.43
LMX1AQ8TE12 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
LMX1AQ8TE12 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC24■■□□□ 1.43
LMX1AQ8TE12 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
LMX1AQ8TE12 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
LMX1AQ8TE12 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.99■■□□□ 1.43
LMX1AQ8TE12 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC23.99■■□□□ 1.43
LMX1AQ8TE12 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
LMX1AQ8TE12 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.99■■□□□ 1.43
LMX1AQ8TE12 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
LMX1AQ8TE12 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23.98■■□□□ 1.43
LMX1AQ8TE12 BEX3-202ENST00000372634 753 ntTSL 2 BASIC23.98■■□□□ 1.43
LMX1AQ8TE12 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
LMX1AQ8TE12 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
LMX1AQ8TE12 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC23.97■■□□□ 1.43
LMX1AQ8TE12 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
LMX1AQ8TE12 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
LMX1AQ8TE12 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
LMX1AQ8TE12 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
LMX1AQ8TE12 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
LMX1AQ8TE12 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
LMX1AQ8TE12 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC23.96■■□□□ 1.43
LMX1AQ8TE12 AL451085.2-201ENST00000605085 799 ntBASIC23.96■■□□□ 1.43
LMX1AQ8TE12 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
LMX1AQ8TE12 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
LMX1AQ8TE12 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.95■■□□□ 1.42
LMX1AQ8TE12 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
LMX1AQ8TE12 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.95■■□□□ 1.42
LMX1AQ8TE12 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
LMX1AQ8TE12 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.94■■□□□ 1.42
LMX1AQ8TE12 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
LMX1AQ8TE12 IDNK-203ENST00000405990 629 ntTSL 2 BASIC23.94■■□□□ 1.42
LMX1AQ8TE12 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
LMX1AQ8TE12 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC23.94■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms