Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
SH3RF1Q7Z6J0 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SH3RF1Q7Z6J0 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 RPS2-210ENST00000530225 765 ntTSL 2 BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
SH3RF1Q7Z6J0 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
SH3RF1Q7Z6J0 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SH3RF1Q7Z6J0 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC28.26■■■□□ 2.11
SH3RF1Q7Z6J0 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
SH3RF1Q7Z6J0 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
SH3RF1Q7Z6J0 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SH3RF1Q7Z6J0 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SH3RF1Q7Z6J0 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
SH3RF1Q7Z6J0 DUX4L18-201ENST00000553347 1267 ntBASIC28.24■■■□□ 2.11
SH3RF1Q7Z6J0 AC129492.7-201ENST00000622992 756 ntBASIC28.24■■■□□ 2.11
SH3RF1Q7Z6J0 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC28.24■■■□□ 2.11
SH3RF1Q7Z6J0 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 MOB2-207ENST00000614710 705 ntTSL 5 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 AL035685.1-201ENST00000636663 812 ntBASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 MED25-210ENST00000612854 801 ntTSL 5 BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 MED25-214ENST00000622402 642 ntTSL 5 BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
SH3RF1Q7Z6J0 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SH3RF1Q7Z6J0 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC28.21■■■□□ 2.11
SH3RF1Q7Z6J0 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC28.21■■■□□ 2.11
SH3RF1Q7Z6J0 PEX7-203ENST00000541292 945 ntTSL 5 BASIC28.21■■■□□ 2.11
SH3RF1Q7Z6J0 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SH3RF1Q7Z6J0 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
SH3RF1Q7Z6J0 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
SH3RF1Q7Z6J0 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
SH3RF1Q7Z6J0 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
SH3RF1Q7Z6J0 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC28.19■■■□□ 2.1
SH3RF1Q7Z6J0 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
SH3RF1Q7Z6J0 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC28.19■■■□□ 2.1
SH3RF1Q7Z6J0 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
SH3RF1Q7Z6J0 AL451085.2-201ENST00000605085 799 ntBASIC28.19■■■□□ 2.1
SH3RF1Q7Z6J0 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC28.19■■■□□ 2.1
SH3RF1Q7Z6J0 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SH3RF1Q7Z6J0 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
SH3RF1Q7Z6J0 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
SH3RF1Q7Z6J0 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC28.17■■■□□ 2.1
SH3RF1Q7Z6J0 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
SH3RF1Q7Z6J0 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC28.17■■■□□ 2.1
SH3RF1Q7Z6J0 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SH3RF1Q7Z6J0 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC28.16■■■□□ 2.1
SH3RF1Q7Z6J0 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SH3RF1Q7Z6J0 AL157400.5-201ENST00000507624 621 ntBASIC28.16■■■□□ 2.1
SH3RF1Q7Z6J0 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
SH3RF1Q7Z6J0 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SH3RF1Q7Z6J0 PKM-203ENST00000389093 2279 ntTSL 5 BASIC28.15■■■□□ 2.1
SH3RF1Q7Z6J0 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC28.15■■■□□ 2.1
SH3RF1Q7Z6J0 AL592295.1-201ENST00000400984 884 ntBASIC28.15■■■□□ 2.1
SH3RF1Q7Z6J0 AL592293.1-201ENST00000502889 1188 ntBASIC28.15■■■□□ 2.1
SH3RF1Q7Z6J0 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC28.15■■■□□ 2.1
SH3RF1Q7Z6J0 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
SH3RF1Q7Z6J0 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC28.14■■■□□ 2.1
SH3RF1Q7Z6J0 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SH3RF1Q7Z6J0 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SH3RF1Q7Z6J0 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
SH3RF1Q7Z6J0 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
SH3RF1Q7Z6J0 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
SH3RF1Q7Z6J0 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC28.12■■■□□ 2.09
SH3RF1Q7Z6J0 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SH3RF1Q7Z6J0 AC009831.1-201ENST00000580420 1582 ntBASIC28.11■■■□□ 2.09
SH3RF1Q7Z6J0 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SH3RF1Q7Z6J0 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
SH3RF1Q7Z6J0 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SH3RF1Q7Z6J0 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
SH3RF1Q7Z6J0 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SH3RF1Q7Z6J0 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC28.1■■■□□ 2.09
SH3RF1Q7Z6J0 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
SH3RF1Q7Z6J0 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC28.1■■■□□ 2.09
SH3RF1Q7Z6J0 AC007029.1-201ENST00000604183 313 ntBASIC28.1■■■□□ 2.09
SH3RF1Q7Z6J0 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC28.1■■■□□ 2.09
SH3RF1Q7Z6J0 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC28.09■■■□□ 2.09
SH3RF1Q7Z6J0 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
SH3RF1Q7Z6J0 TRIR-205ENST00000592273 783 ntTSL 3 BASIC28.09■■■□□ 2.09
SH3RF1Q7Z6J0 AC133552.2-201ENST00000619106 1032 ntBASIC28.09■■■□□ 2.09
SH3RF1Q7Z6J0 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC28.08■■■□□ 2.09
SH3RF1Q7Z6J0 AC126177.7-201ENST00000547904 679 ntBASIC28.08■■■□□ 2.09
SH3RF1Q7Z6J0 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
SH3RF1Q7Z6J0 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC28.08■■■□□ 2.09
SH3RF1Q7Z6J0 MTURN-203ENST00000409688 843 ntTSL 2 BASIC28.07■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms