Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.014e-16■■■■■ 53.1
LIN28BQ6ZN17 ADAM9-208ENST00000484143 658 ntTSL 34.92□□□□□ -1.622e-13■■■■■ 53.1
LIN28BQ6ZN17 PPT2-254ENST00000493548 790 ntTSL 523.45■■□□□ 1.344e-13■■■■■ 52.9
LIN28BQ6ZN17 KAT6A-204ENST00000418721 3279 ntTSL 210.8□□□□□ -0.684e-15■■■■■ 52.9
LIN28BQ6ZN17 KAT6A-208ENST00000485568 3592 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.994e-15■■■■■ 52.9
LIN28BQ6ZN17 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC7.39□□□□□ -1.234e-15■■■■■ 52.9
LIN28BQ6ZN17 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.294e-15■■■■■ 52.9
LIN28BQ6ZN17 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC6.11□□□□□ -1.434e-15■■■■■ 52.9
LIN28BQ6ZN17 PRMT2-213ENST00000486520 4031 ntTSL 212.58□□□□□ -0.48e-30■■■■■ 52.9
LIN28BQ6ZN17 PIK3CB-205ENST00000465581 690 ntTSL 36.38□□□□□ -1.391e-11■■■■■ 52.9
LIN28BQ6ZN17 YWHAE-204ENST00000486241 691 ntTSL 216.46■□□□□ 0.231e-18■■■■■ 52.7
LIN28BQ6ZN17 YWHAE-205ENST00000489287 465 ntTSL 212.22□□□□□ -0.451e-18■■■■■ 52.7
LIN28BQ6ZN17 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.241e-7■■■■■ 52.7
LIN28BQ6ZN17 MYADM-204ENST00000391770 3056 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.251e-7■■■■■ 52.7
LIN28BQ6ZN17 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.341e-7■■■■■ 52.7
LIN28BQ6ZN17 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.521e-7■■■■■ 52.7
LIN28BQ6ZN17 USP15-216ENST00000550632 728 ntTSL 317.69■□□□□ 0.422e-16■■■■■ 52.7
LIN28BQ6ZN17 USP15-215ENST00000549523 584 ntTSL 513.82□□□□□ -0.22e-16■■■■■ 52.7
LIN28BQ6ZN17 USP15-208ENST00000548524 648 ntTSL 210.72□□□□□ -0.692e-16■■■■■ 52.7
LIN28BQ6ZN17 USP15-202ENST00000312635 2226 ntTSL 1 (best) BASIC9.72□□□□□ -0.852e-16■■■■■ 52.7
LIN28BQ6ZN17 USP15-212ENST00000549237 791 ntTSL 37.15□□□□□ -1.262e-16■■■■■ 52.7
LIN28BQ6ZN17 USP15-205ENST00000546694 799 ntTSL 55.44□□□□□ -1.542e-16■■■■■ 52.7
LIN28BQ6ZN17 USP15-210ENST00000548836 579 ntTSL 35.17□□□□□ -1.582e-16■■■■■ 52.7
LIN28BQ6ZN17 ASAH1-204ENST00000517409 740 ntTSL 312□□□□□ -0.492e-13■■■■■ 52.5
LIN28BQ6ZN17 SON-217ENST00000478183 1818 ntTSL 1 (best)9.61□□□□□ -0.873e-9■■■■■ 52.5
LIN28BQ6ZN17 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.25■□□□□ 0.671e-11■■■■■ 52.5
LIN28BQ6ZN17 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.173e-16■■■■■ 52.5
LIN28BQ6ZN17 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.05■□□□□ 0.488e-18■■■■■ 52.4
LIN28BQ6ZN17 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.388e-18■■■■■ 52.4
LIN28BQ6ZN17 CNNM3-203ENST00000465224 2607 ntTSL 1 (best)9.59□□□□□ -0.878e-18■■■■■ 52.4
LIN28BQ6ZN17 CHD4-212ENST00000545083 511 ntTSL 311.13□□□□□ -0.633e-12■■■■■ 52.2
LIN28BQ6ZN17 CHD4-207ENST00000537634 691 ntTSL 211.11□□□□□ -0.633e-12■■■■■ 52.2
LIN28BQ6ZN17 TKT-204ENST00000450814 1941 ntTSL 218.36■□□□□ 0.531e-7■■■■■ 51.9
LIN28BQ6ZN17 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.55■□□□□ 0.241e-7■■■■■ 51.9
LIN28BQ6ZN17 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.8□□□□□ -0.041e-7■■■■■ 51.9
LIN28BQ6ZN17 TKT-210ENST00000469678 1871 ntTSL 514.21□□□□□ -0.131e-7■■■■■ 51.9
LIN28BQ6ZN17 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.391e-7■■■■■ 51.9
LIN28BQ6ZN17 TKT-207ENST00000461139 1972 ntTSL 212.56□□□□□ -0.41e-7■■■■■ 51.9
LIN28BQ6ZN17 TKT-208ENST00000462138 3010 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.491e-7■■■■■ 51.9
LIN28BQ6ZN17 TKT-206ENST00000460343 7286 ntTSL 211.16□□□□□ -0.621e-7■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-205ENST00000517812 523 ntTSL 318.22■□□□□ 0.512e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-228ENST00000523517 2378 ntTSL 1 (best)17.33■□□□□ 0.362e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-211ENST00000519733 527 ntTSL 416.18■□□□□ 0.182e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-206ENST00000517890 2501 ntTSL 216.13■□□□□ 0.172e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC16.05■□□□□ 0.162e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-207ENST00000517917 1731 ntTSL 215.55■□□□□ 0.082e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-203ENST00000517388 577 ntTSL 415.25■□□□□ 0.032e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC14.9□□□□□ -0.022e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-208ENST00000518647 1543 ntTSL 214.57□□□□□ -0.082e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-209ENST00000518679 2784 ntTSL 214.51□□□□□ -0.092e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-215ENST00000520320 628 ntTSL 514.17□□□□□ -0.142e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.232e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-227ENST00000523105 1966 ntTSL 213.46□□□□□ -0.252e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC12.63□□□□□ -0.392e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-220ENST00000521661 2196 ntTSL 512.19□□□□□ -0.462e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-214ENST00000520201 5002 ntTSL 212.08□□□□□ -0.482e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-216ENST00000520655 3777 ntTSL 212□□□□□ -0.492e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-230ENST00000629753 4069 ntTSL 2 BASIC11.98□□□□□ -0.492e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-201ENST00000342222 3952 ntTSL 211.62□□□□□ -0.552e-14■■■■■ 51.9
LIN28BQ6ZN17 IKBKB-202ENST00000416505 4036 ntTSL 2 BASIC10.48□□□□□ -0.732e-14■■■■■ 51.9
LIN28BQ6ZN17 STIL-202ENST00000360380 5225 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.63e-11■■■■■ 51.8
LIN28BQ6ZN17 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.273e-11■■■■■ 51.8
LIN28BQ6ZN17 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.323e-11■■■■■ 51.8
LIN28BQ6ZN17 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.573e-11■■■■■ 51.8
LIN28BQ6ZN17 RNF114-208ENST00000625177 580 ntTSL 327.15■■□□□ 1.945e-12■■■■■ 51.7
LIN28BQ6ZN17 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC24.05■■□□□ 1.445e-12■■■■■ 51.7
LIN28BQ6ZN17 RNF114-204ENST00000623528 624 ntTSL 322.21■■□□□ 1.155e-12■■■■■ 51.7
LIN28BQ6ZN17 RNF114-203ENST00000622999 2438 ntTSL 219.71■□□□□ 0.755e-12■■■■■ 51.7
LIN28BQ6ZN17 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.485e-12■■■■■ 51.7
LIN28BQ6ZN17 RNF114-207ENST00000624666 2006 ntTSL 211.09□□□□□ -0.635e-12■■■■■ 51.7
LIN28BQ6ZN17 RPL5-201ENST00000315741 681 ntTSL 516.42■□□□□ 0.222e-22■■■■■ 51.7
LIN28BQ6ZN17 RPL5-202ENST00000370321 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.22e-22■■■■■ 51.7
LIN28BQ6ZN17 RPL5-203ENST00000461952 1116 ntTSL 24.97□□□□□ -1.612e-22■■■■■ 51.7
LIN28BQ6ZN17 RPL5-204ENST00000470843 694 ntTSL 34.76□□□□□ -1.652e-22■■■■■ 51.7
LIN28BQ6ZN17 PTP4A2-201ENST00000457805 1032 ntTSL 2 BASIC9.4□□□□□ -0.91e-10■■■■■ 51.7
LIN28BQ6ZN17 PTP4A2-217ENST00000602683 667 ntTSL 24.87□□□□□ -1.631e-10■■■■■ 51.7
LIN28BQ6ZN17 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.19□□□□□ -1.741e-10■■■■■ 51.7
LIN28BQ6ZN17 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.184e-7■■■■■ 51.7
LIN28BQ6ZN17 SEMA4C-206ENST00000482925 3776 ntTSL 212.66□□□□□ -0.384e-7■■■■■ 51.7
LIN28BQ6ZN17 MPZL1-204ENST00000403379 961 ntTSL 56.06□□□□□ -1.441e-19■■■■■ 51.6
LIN28BQ6ZN17 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.069e-14■■■■■ 51.5
LIN28BQ6ZN17 LMBRD1-203ENST00000472827 1861 ntTSL 511.23□□□□□ -0.619e-14■■■■■ 51.5
LIN28BQ6ZN17 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.51□□□□□ -2.019e-14■■■■■ 51.5
LIN28BQ6ZN17 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.255e-7■■■■■ 51.5
LIN28BQ6ZN17 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.255e-7■■■■■ 51.5
LIN28BQ6ZN17 UNC13D-213ENST00000590762 848 ntTSL 526.12■■□□□ 1.773e-8■■■■■ 51.5
LIN28BQ6ZN17 UNC13D-203ENST00000585574 658 ntTSL 319.54■□□□□ 0.723e-8■■■■■ 51.5
LIN28BQ6ZN17 UNC13D-205ENST00000586147 589 ntTSL 516.25■□□□□ 0.193e-8■■■■■ 51.5
LIN28BQ6ZN17 UNC13D-210ENST00000587504 1050 ntTSL 515.59■□□□□ 0.093e-8■■■■■ 51.5
LIN28BQ6ZN17 UNC13D-215ENST00000591563 4382 ntTSL 212.51□□□□□ -0.413e-8■■■■■ 51.5
LIN28BQ6ZN17 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.443e-8■■■■■ 51.5
LIN28BQ6ZN17 UNC13D-202ENST00000412096 3648 ntTSL 2 BASIC11.9□□□□□ -0.53e-8■■■■■ 51.5
LIN28BQ6ZN17 UNC13D-217ENST00000592386 930 ntTSL 511.48□□□□□ -0.573e-8■■■■■ 51.5
LIN28BQ6ZN17 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.074e-16■■■■■ 51.5
LIN28BQ6ZN17 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.5■□□□□ 0.551e-10■■■■■ 51.5
LIN28BQ6ZN17 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.021e-10■■■■■ 51.5
LIN28BQ6ZN17 MPHOSPH10-204ENST00000493360 1584 ntTSL 211.98□□□□□ -0.496e-13■■■■■ 51.3
LIN28BQ6ZN17 SOD1-203ENST00000470944 1746 ntTSL 231.41■■■□□ 2.623e-12■■■■■ 51.2
LIN28BQ6ZN17 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.413e-12■■■■■ 51.2
LIN28BQ6ZN17 SOD1-204ENST00000476106 586 ntTSL 515.2■□□□□ 0.023e-12■■■■■ 51.2
Retrieved 100 of 21,972 protein–RNA pairs in 184.7 ms