RNA–Protein interactions for RNA: ENST00000303383.7

SHCBP1-201, Transcript of SHC binding and spindle associated 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHCBP1, Length 3,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1-201ENST00000303383 NISCHQ9Y2I1 1504 aa32.01■■■□□ 2.71
SHCBP1-201ENST00000303383 CCDC180Q9P1Z9 1646 aa27.74■■■□□ 2.03
SHCBP1-201ENST00000303383 ZCCHC6Q5VYS8 1495 aaKnown RBP26.89■■□□□ 1.89
SHCBP1-201ENST00000303383 DCAF8L2P0C7V8 631 aa26.82■■□□□ 1.88
SHCBP1-201ENST00000303383 SHROOM4Q9ULL8 1493 aa26.54■■□□□ 1.84
SHCBP1-201ENST00000303383 DCAF1Q9Y4B6 1507 aa26.36■■□□□ 1.81
SHCBP1-201ENST00000303383 ABCC9O60706 1549 aa26.32■■□□□ 1.8
SHCBP1-201ENST00000303383 MYO15BQ96JP2 1530 aa25.96■■□□□ 1.75
SHCBP1-201ENST00000303383 NACADO15069 1562 aa25.86■■□□□ 1.73
SHCBP1-201ENST00000303383 SCRIBQ14160 1630 aa25.71■■□□□ 1.71
SHCBP1-201ENST00000303383 SUPT5HO00267 1087 aaKnown RBP25.69■■□□□ 1.7
SHCBP1-201ENST00000303383 RB1CC1Q8TDY2 1594 aa25.65■■□□□ 1.7
SHCBP1-201ENST00000303383 UNC13AQ9UPW8 1703 aa25.02■■□□□ 1.6
SHCBP1-201ENST00000303383 RSF1Q96T23 1441 aaPredicted RBP24.94■■□□□ 1.58
SHCBP1-201ENST00000303383 PABPN1Q86U42 306 aaKnown RBP eCLIP24.94■■□□□ 1.58
SHCBP1-201ENST00000303383 CECR2Q9BXF3 1484 aa24.9■■□□□ 1.58
SHCBP1-201ENST00000303383 MROH2BQ7Z745 1585 aa24.76■■□□□ 1.55
SHCBP1-201ENST00000303383 BICRAQ9NZM4 1560 aa24.76■■□□□ 1.55
SHCBP1-201ENST00000303383 BAZ1AQ9NRL2 1556 aaPredicted RBP24.73■■□□□ 1.55
SHCBP1-201ENST00000303383 WIZO95785 1651 aa24.58■■□□□ 1.52
SHCBP1-201ENST00000303383 SMARCA4P51532 1647 aa24.56■■□□□ 1.52
SHCBP1-201ENST00000303383 CHIC1Q5VXU3 224 aa24.51■■□□□ 1.51
SHCBP1-201ENST00000303383 TOP2AP11388 1531 aaKnown RBP24.3■■□□□ 1.48
SHCBP1-201ENST00000303383 SMARCA2P51531 1590 aa24.15■■□□□ 1.46
SHCBP1-201ENST00000303383 PEG3Q9GZU2 1588 aa24.15■■□□□ 1.46
SHCBP1-201ENST00000303383 ATAD2BQ9ULI0 1458 aa24.14■■□□□ 1.46
SHCBP1-201ENST00000303383 CCDC88BA6NC98 1476 aa24.1■■□□□ 1.45
SHCBP1-201ENST00000303383 BAZ1BQ9UIG0 1483 aaKnown RBP24.1■■□□□ 1.45
SHCBP1-201ENST00000303383 TRIM41Q8WV44 630 aa24.09■■□□□ 1.45
SHCBP1-201ENST00000303383 EIF4G1Q04637 1599 aaKnown RBP24.09■■□□□ 1.45
SHCBP1-201ENST00000303383 NCAPD3P42695 1498 aa23.87■■□□□ 1.41
SHCBP1-201ENST00000303383 HMGXB3Q12766 1538 aa23.83■■□□□ 1.4
SHCBP1-201ENST00000303383 FAM9AQ8IZU1 332 aaPredicted RBP23.75■■□□□ 1.39
SHCBP1-201ENST00000303383 CC2D2AQ9P2K1 1620 aa23.7■■□□□ 1.39
SHCBP1-201ENST00000303383 ABCC8Q09428 1581 aa23.69■■□□□ 1.38
SHCBP1-201ENST00000303383 LOC105371045A0A1W2PR82 267 aa23.67■■□□□ 1.38
SHCBP1-201ENST00000303383 WRNQ14191 1432 aaPredicted RBP eCLIP23.54■■□□□ 1.36
SHCBP1-201ENST00000303383 EHMT2Q96KQ7 1210 aa23.5■■□□□ 1.35
SHCBP1-201ENST00000303383 CFTRP13569 1480 aa23.41■■□□□ 1.34
SHCBP1-201ENST00000303383 CADPSQ9ULU8 1353 aa23.36■■□□□ 1.33
SHCBP1-201ENST00000303383 SYNJ1O43426 1573 aa23.34■■□□□ 1.33
SHCBP1-201ENST00000303383 SOGA1O94964 1423 aa23.3■■□□□ 1.32
SHCBP1-201ENST00000303383 EEA1Q15075 1411 aa23.28■■□□□ 1.32
SHCBP1-201ENST00000303383 CSRNP3Q8WYN3 585 aa23.23■■□□□ 1.31
SHCBP1-201ENST00000303383 TOP2BQ02880 1626 aa23.22■■□□□ 1.31
SHCBP1-201ENST00000303383 PRDM2Q13029 1718 aa23.21■■□□□ 1.31
SHCBP1-201ENST00000303383 RUSC2Q8N2Y8 1516 aa23.17■■□□□ 1.3
SHCBP1-201ENST00000303383 BIVM-ERCC5R4GMW8 1640 aa23.15■■□□□ 1.3
SHCBP1-201ENST00000303383 CUX1P39880 1505 aa23.13■■□□□ 1.29
SHCBP1-201ENST00000303383 FANCD2Q9BXW9 1451 aa23.11■■□□□ 1.29
SHCBP1-201ENST00000303383 UBTFP17480 764 aaKnown RBP23.11■■□□□ 1.29
SHCBP1-201ENST00000303383 DNAJC5BQ9UF47 199 aa23.1■■□□□ 1.29
SHCBP1-201ENST00000303383 NESP48681 1621 aa23.1■■□□□ 1.29
SHCBP1-201ENST00000303383 LAMC3Q9Y6N6 1575 aa23.05■■□□□ 1.28
SHCBP1-201ENST00000303383 GOLGA3Q08378 1498 aa23■■□□□ 1.27
SHCBP1-201ENST00000303383 PDS5BQ9NTI5 1447 aa22.98■■□□□ 1.27
SHCBP1-201ENST00000303383 CEP164Q9UPV0 1460 aa22.97■■□□□ 1.27
SHCBP1-201ENST00000303383 KIF27Q86VH2 1401 aa22.96■■□□□ 1.27
SHCBP1-201ENST00000303383 TNIKQ9UKE5 1360 aa22.94■■□□□ 1.26
SHCBP1-201ENST00000303383 FGD5Q6ZNL6 1462 aa22.91■■□□□ 1.26
SHCBP1-201ENST00000303383 KIF21BO75037 1637 aa22.88■■□□□ 1.25
SHCBP1-201ENST00000303383 DNMBPQ6XZF7 1577 aa22.87■■□□□ 1.25
SHCBP1-201ENST00000303383 PCGF6Q9BYE7 350 aa22.87■■□□□ 1.25
SHCBP1-201ENST00000303383 CEP162Q5TB80 1403 aa22.87■■□□□ 1.25
SHCBP1-201ENST00000303383 CUX2O14529 1486 aa22.86■■□□□ 1.25
SHCBP1-201ENST00000303383 TOPBP1Q92547 1522 aa22.84■■□□□ 1.25
SHCBP1-201ENST00000303383 RAPGEF2Q9Y4G8 1499 aa22.81■■□□□ 1.24
SHCBP1-201ENST00000303383 RANGAP1P46060 587 aaPredicted RBP22.77■■□□□ 1.24
SHCBP1-201ENST00000303383 KIF21AQ7Z4S6 1674 aa22.75■■□□□ 1.23
SHCBP1-201ENST00000303383 POLA1P09884 1462 aaPredicted RBP22.75■■□□□ 1.23
SHCBP1-201ENST00000303383 URB2Q14146 1524 aaKnown RBP22.75■■□□□ 1.23
SHCBP1-201ENST00000303383 TRIM26Q12899 539 aaPredicted RBP22.74■■□□□ 1.23
SHCBP1-201ENST00000303383 RAD54L2Q9Y4B4 1467 aa22.73■■□□□ 1.23
SHCBP1-201ENST00000303383 PRXQ9BXM0 1461 aa22.72■■□□□ 1.23
SHCBP1-201ENST00000303383 ERICH3Q5RHP9 1530 aa22.71■■□□□ 1.23
SHCBP1-201ENST00000303383 CLIP1P30622 1438 aa22.68■■□□□ 1.22
SHCBP1-201ENST00000303383 IGF1RP08069 1367 aa22.67■■□□□ 1.22
SHCBP1-201ENST00000303383 PPARGC1BQ86YN6 1023 aaKnown RBP22.66■■□□□ 1.22
SHCBP1-201ENST00000303383 ABCA10Q8WWZ4 1543 aa22.65■■□□□ 1.22
SHCBP1-201ENST00000303383 CARMIL1Q5VZK9 1371 aa22.63■■□□□ 1.21
SHCBP1-201ENST00000303383 ERCC6Q03468 1493 aa22.62■■□□□ 1.21
SHCBP1-201ENST00000303383 MRC2Q9UBG0 1479 aa22.61■■□□□ 1.21
SHCBP1-201ENST00000303383 TDRD9Q8NDG6 1382 aaKnown RBP22.56■■□□□ 1.2
SHCBP1-201ENST00000303383 TTBK1Q5TCY1 1321 aaPredicted RBP22.53■■□□□ 1.2
SHCBP1-201ENST00000303383 APLP2Q06481 763 aa22.53■■□□□ 1.2
SHCBP1-201ENST00000303383 GAPVD1Q14C86 1478 aa22.48■■□□□ 1.19
SHCBP1-201ENST00000303383 WDR97A6NE52 1622 aa22.45■■□□□ 1.18
SHCBP1-201ENST00000303383 VPS8Q8N3P4 1428 aa22.45■■□□□ 1.18
SHCBP1-201ENST00000303383 CUL7Q14999 1698 aa22.43■■□□□ 1.18
SHCBP1-201ENST00000303383 WDR62O43379 1518 aa22.4■■□□□ 1.18
SHCBP1-201ENST00000303383 TARBP1Q13395 1621 aaKnown RBP22.4■■□□□ 1.18
SHCBP1-201ENST00000303383 ABCA5Q8WWZ7 1642 aa22.4■■□□□ 1.18
SHCBP1-201ENST00000303383 IFT140Q96RY7 1462 aa22.37■■□□□ 1.17
SHCBP1-201ENST00000303383 AQRO60306 1485 aaKnown RBP eCLIP22.34■■□□□ 1.172e-7■■■■■ 33.5
SHCBP1-201ENST00000303383 ARAP1Q96P48 1450 aa22.31■■□□□ 1.16
SHCBP1-201ENST00000303383 ARHGAP35Q9NRY4 1499 aa22.3■■□□□ 1.16
SHCBP1-201ENST00000303383 THOC2Q8NI27 1593 aaKnown RBP22.26■■□□□ 1.15
SHCBP1-201ENST00000303383 GRIN2BQ13224 1484 aa22.26■■□□□ 1.15
SHCBP1-201ENST00000303383 P3H3Q8IVL6 736 aa22.26■■□□□ 1.15
SHCBP1-201ENST00000303383 HRCP23327 699 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms