RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 NISCHQ9Y2I1 1504 aa24.22■■□□□ 1.47
CHD4-212ENST00000545083 ABCC9O60706 1549 aa22.32■■□□□ 1.16
CHD4-212ENST00000545083 CCDC180Q9P1Z9 1646 aa21.84■■□□□ 1.09
CHD4-212ENST00000545083 DNAJC5BQ9UF47 199 aa21.36■■□□□ 1.01
CHD4-212ENST00000545083 RB1CC1Q8TDY2 1594 aa21■□□□□ 0.95
CHD4-212ENST00000545083 NACADO15069 1562 aa20.76■□□□□ 0.91
CHD4-212ENST00000545083 PABPN1Q86U42 306 aaKnown RBP eCLIP20.74■□□□□ 0.91
CHD4-212ENST00000545083 DCAF8L2P0C7V8 631 aa20.62■□□□□ 0.89
CHD4-212ENST00000545083 UNC13AQ9UPW8 1703 aa20.53■□□□□ 0.88
CHD4-212ENST00000545083 BICRAQ9NZM4 1560 aa20.47■□□□□ 0.87
CHD4-212ENST00000545083 MYO15BQ96JP2 1530 aa20.35■□□□□ 0.85
CHD4-212ENST00000545083 CECR2Q9BXF3 1484 aa20.13■□□□□ 0.81
CHD4-212ENST00000545083 CC2D2AQ9P2K1 1620 aa20.11■□□□□ 0.81
CHD4-212ENST00000545083 SHROOM4Q9ULL8 1493 aa20.07■□□□□ 0.8
CHD4-212ENST00000545083 ZCCHC6Q5VYS8 1495 aaKnown RBP19.99■□□□□ 0.79
CHD4-212ENST00000545083 EIF4G1Q04637 1599 aaKnown RBP19.97■□□□□ 0.79
CHD4-212ENST00000545083 DCAF1Q9Y4B6 1507 aa19.95■□□□□ 0.78
CHD4-212ENST00000545083 SCRIBQ14160 1630 aa19.94■□□□□ 0.78
CHD4-212ENST00000545083 DNAJC5Q9H3Z4 198 aa19.84■□□□□ 0.77
CHD4-212ENST00000545083 CUX2O14529 1486 aa19.35■□□□□ 0.69
CHD4-212ENST00000545083 ERCC6Q03468 1493 aa19.25■□□□□ 0.67
CHD4-212ENST00000545083 NCAPD3P42695 1498 aa19.22■□□□□ 0.67
CHD4-212ENST00000545083 ATAD2BQ9ULI0 1458 aa19.11■□□□□ 0.65
CHD4-212ENST00000545083 NESP48681 1621 aa19.08■□□□□ 0.65
CHD4-212ENST00000545083 HMGXB3Q12766 1538 aa19.01■□□□□ 0.63
CHD4-212ENST00000545083 SMARCA2P51531 1590 aa18.98■□□□□ 0.63
CHD4-212ENST00000545083 SMARCA4P51532 1647 aa18.96■□□□□ 0.63
CHD4-212ENST00000545083 THOC2Q8NI27 1593 aaKnown RBP18.93■□□□□ 0.62
CHD4-212ENST00000545083 BAZ1BQ9UIG0 1483 aaKnown RBP18.87■□□□□ 0.61
CHD4-212ENST00000545083 TRIM41Q8WV44 630 aa18.8■□□□□ 0.6
CHD4-212ENST00000545083 LAMC3Q9Y6N6 1575 aa18.8■□□□□ 0.6
CHD4-212ENST00000545083 BAZ1AQ9NRL2 1556 aaPredicted RBP18.79■□□□□ 0.6
CHD4-212ENST00000545083 PEG3Q9GZU2 1588 aa18.78■□□□□ 0.6
CHD4-212ENST00000545083 KIF21AQ7Z4S6 1674 aa18.76■□□□□ 0.59
CHD4-212ENST00000545083 PDS5BQ9NTI5 1447 aa18.72■□□□□ 0.59
CHD4-212ENST00000545083 MROH2BQ7Z745 1585 aa18.68■□□□□ 0.58
CHD4-212ENST00000545083 CADPSQ9ULU8 1353 aa18.61■□□□□ 0.57
CHD4-212ENST00000545083 MRC2Q9UBG0 1479 aa18.6■□□□□ 0.57
CHD4-212ENST00000545083 WDR62O43379 1518 aa18.57■□□□□ 0.56
CHD4-212ENST00000545083 CEP164Q9UPV0 1460 aa18.44■□□□□ 0.54
CHD4-212ENST00000545083 WIZO95785 1651 aa18.41■□□□□ 0.54
CHD4-212ENST00000545083 OSCARQ8IYS5 282 aa18.41■□□□□ 0.54
CHD4-212ENST00000545083 FANCD2Q9BXW9 1451 aa18.39■□□□□ 0.54
CHD4-212ENST00000545083 CFTRP13569 1480 aa18.32■□□□□ 0.52
CHD4-212ENST00000545083 URB2Q14146 1524 aaKnown RBP18.29■□□□□ 0.52
CHD4-212ENST00000545083 RIMBP3CA6NJZ7 1639 aa18.23■□□□□ 0.51
CHD4-212ENST00000545083 RIMBP3BA6NNM3 1639 aa18.23■□□□□ 0.51
CHD4-212ENST00000545083 RIMBP3Q9UFD9 1639 aa18.23■□□□□ 0.51
CHD4-212ENST00000545083 ZNF608Q9ULD9 1512 aaPredicted RBP18.15■□□□□ 0.5
CHD4-212ENST00000545083 RSF1Q96T23 1441 aaPredicted RBP18.15■□□□□ 0.5
CHD4-212ENST00000545083 TOP2AP11388 1531 aaKnown RBP18.14■□□□□ 0.49
CHD4-212ENST00000545083 ARHGEF11O15085 1522 aa18.13■□□□□ 0.49
CHD4-212ENST00000545083 IFT140Q96RY7 1462 aa18.08■□□□□ 0.49
CHD4-212ENST00000545083 CYB5RLQ6IPT4 315 aa18.04■□□□□ 0.48
CHD4-212ENST00000545083 TOPBP1Q92547 1522 aa18.01■□□□□ 0.47
CHD4-212ENST00000545083 PRDM2Q13029 1718 aa18.01■□□□□ 0.47
CHD4-212ENST00000545083 EIF4G3O43432 1585 aaKnown RBP17.98■□□□□ 0.47
CHD4-212ENST00000545083 CCDC88BA6NC98 1476 aa17.97■□□□□ 0.47
CHD4-212ENST00000545083 ARAP1Q96P48 1450 aa17.95■□□□□ 0.46
CHD4-212ENST00000545083 TRHP20396 242 aaPredicted RBP17.94■□□□□ 0.46
CHD4-212ENST00000545083 AQRO60306 1485 aaKnown RBP eCLIP17.93■□□□□ 0.462e-6■■■□□ 16.8
CHD4-212ENST00000545083 CHD1O14646 1710 aa17.9■□□□□ 0.46
CHD4-212ENST00000545083 DNMBPQ6XZF7 1577 aa17.88■□□□□ 0.45
CHD4-212ENST00000545083 ABCC8Q09428 1581 aa17.87■□□□□ 0.45
CHD4-212ENST00000545083 TARBP1Q13395 1621 aaKnown RBP17.87■□□□□ 0.45
CHD4-212ENST00000545083 FBLN2P98095 1184 aa17.86■□□□□ 0.45
CHD4-212ENST00000545083 POLA1P09884 1462 aaPredicted RBP17.82■□□□□ 0.44
CHD4-212ENST00000545083 RAD54L2Q9Y4B4 1467 aa17.77■□□□□ 0.44
CHD4-212ENST00000545083 TDRD9Q8NDG6 1382 aaKnown RBP17.76■□□□□ 0.43
CHD4-212ENST00000545083 CLASP1Q7Z460 1538 aa17.72■□□□□ 0.43
CHD4-212ENST00000545083 SNAPC4Q5SXM2 1469 aa17.71■□□□□ 0.43
CHD4-212ENST00000545083 SOGA1O94964 1423 aa17.71■□□□□ 0.43
CHD4-212ENST00000545083 AEBP2Q6ZN18 517 aaPredicted RBP17.68■□□□□ 0.42
CHD4-212ENST00000545083 CHMP7Q8WUX9 453 aaPredicted RBP17.65■□□□□ 0.42
CHD4-212ENST00000545083 FGD5Q6ZNL6 1462 aa17.63■□□□□ 0.41
CHD4-212ENST00000545083 SYNJ1O43426 1573 aa17.63■□□□□ 0.41
CHD4-212ENST00000545083 MAGI1Q96QZ7 1491 aaPredicted RBP17.62■□□□□ 0.41
CHD4-212ENST00000545083 WDR97A6NE52 1622 aa17.6■□□□□ 0.41
CHD4-212ENST00000545083 GRIN2BQ13224 1484 aa17.59■□□□□ 0.41
CHD4-212ENST00000545083 SYNJ2O15056 1496 aa17.57■□□□□ 0.4
CHD4-212ENST00000545083 CUX1P39880 1505 aa17.57■□□□□ 0.4
CHD4-212ENST00000545083 GAPVD1Q14C86 1478 aa17.56■□□□□ 0.4
CHD4-212ENST00000545083 ERCC6L2Q5T890 1561 aa17.47■□□□□ 0.39
CHD4-212ENST00000545083 PBRM1Q86U86 1689 aa17.45■□□□□ 0.38
CHD4-212ENST00000545083 ABCA5Q8WWZ7 1642 aa17.41■□□□□ 0.38
CHD4-212ENST00000545083 ABCA10Q8WWZ4 1543 aa17.41■□□□□ 0.38
CHD4-212ENST00000545083 GRIN2AQ12879 1464 aa17.37■□□□□ 0.37
CHD4-212ENST00000545083 CEP170Q5SW79 1584 aa17.36■□□□□ 0.37
CHD4-212ENST00000545083 NUP160Q12769 1436 aa17.34■□□□□ 0.37
CHD4-212ENST00000545083 ADAMTS12P58397 1594 aa17.31■□□□□ 0.36
CHD4-212ENST00000545083 SHROOM2Q13796 1616 aa17.29■□□□□ 0.36
CHD4-212ENST00000545083 KIF13AQ9H1H9 1805 aa17.26■□□□□ 0.35
CHD4-212ENST00000545083 FHAD1B1AJZ9 1412 aa17.24■□□□□ 0.35
CHD4-212ENST00000545083 WRNQ14191 1432 aaPredicted RBP eCLIP17.24■□□□□ 0.35
CHD4-212ENST00000545083 PRG4Q92954 1404 aaPredicted RBP17.21■□□□□ 0.34
CHD4-212ENST00000545083 FAM69CQ0P6D2 419 aa17.16■□□□□ 0.34
CHD4-212ENST00000545083 ABCC10Q5T3U5 1492 aa17.16■□□□□ 0.34
CHD4-212ENST00000545083 JPH4Q96JJ6 628 aa17.15■□□□□ 0.34
CHD4-212ENST00000545083 ERICH3Q5RHP9 1530 aa17.15■□□□□ 0.34
CHD4-212ENST00000545083 TOP2BQ02880 1626 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms