RNA–Protein interactions for RNA: ENST00000537634.1

CHD4-207, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 691 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-207ENST00000537634 NISCHQ9Y2I1 1504 aa24.19■■□□□ 1.46
CHD4-207ENST00000537634 CCDC180Q9P1Z9 1646 aa21.73■■□□□ 1.07
CHD4-207ENST00000537634 ABCC9O60706 1549 aa21.62■■□□□ 1.05
CHD4-207ENST00000537634 RB1CC1Q8TDY2 1594 aa20.63■□□□□ 0.89
CHD4-207ENST00000537634 NACADO15069 1562 aa20.51■□□□□ 0.87
CHD4-207ENST00000537634 DCAF8L2P0C7V8 631 aa20.37■□□□□ 0.85
CHD4-207ENST00000537634 MYO15BQ96JP2 1530 aa20.23■□□□□ 0.83
CHD4-207ENST00000537634 UNC13AQ9UPW8 1703 aa20.17■□□□□ 0.82
CHD4-207ENST00000537634 DNAJC5BQ9UF47 199 aa20.16■□□□□ 0.82
CHD4-207ENST00000537634 PABPN1Q86U42 306 aaKnown RBP eCLIP20.1■□□□□ 0.81
CHD4-207ENST00000537634 ZCCHC6Q5VYS8 1495 aaKnown RBP20.07■□□□□ 0.8
CHD4-207ENST00000537634 BICRAQ9NZM4 1560 aa20■□□□□ 0.79
CHD4-207ENST00000537634 DCAF1Q9Y4B6 1507 aa19.99■□□□□ 0.79
CHD4-207ENST00000537634 SCRIBQ14160 1630 aa19.79■□□□□ 0.76
CHD4-207ENST00000537634 SHROOM4Q9ULL8 1493 aa19.78■□□□□ 0.76
CHD4-207ENST00000537634 CC2D2AQ9P2K1 1620 aa19.54■□□□□ 0.72
CHD4-207ENST00000537634 EIF4G1Q04637 1599 aaKnown RBP19.53■□□□□ 0.72
CHD4-207ENST00000537634 CECR2Q9BXF3 1484 aa19.48■□□□□ 0.71
CHD4-207ENST00000537634 NCAPD3P42695 1498 aa18.9■□□□□ 0.62
CHD4-207ENST00000537634 SMARCA4P51532 1647 aa18.88■□□□□ 0.61
CHD4-207ENST00000537634 ATAD2BQ9ULI0 1458 aa18.84■□□□□ 0.61
CHD4-207ENST00000537634 SMARCA2P51531 1590 aa18.84■□□□□ 0.61
CHD4-207ENST00000537634 HMGXB3Q12766 1538 aa18.8■□□□□ 0.6
CHD4-207ENST00000537634 BAZ1AQ9NRL2 1556 aaPredicted RBP18.8■□□□□ 0.6
CHD4-207ENST00000537634 BAZ1BQ9UIG0 1483 aaKnown RBP18.71■□□□□ 0.59
CHD4-207ENST00000537634 ERCC6Q03468 1493 aa18.7■□□□□ 0.58
CHD4-207ENST00000537634 PEG3Q9GZU2 1588 aa18.68■□□□□ 0.58
CHD4-207ENST00000537634 CUX2O14529 1486 aa18.63■□□□□ 0.57
CHD4-207ENST00000537634 MROH2BQ7Z745 1585 aa18.63■□□□□ 0.57
CHD4-207ENST00000537634 NESP48681 1621 aa18.58■□□□□ 0.56
CHD4-207ENST00000537634 LAMC3Q9Y6N6 1575 aa18.5■□□□□ 0.55
CHD4-207ENST00000537634 DNAJC5Q9H3Z4 198 aa18.49■□□□□ 0.55
CHD4-207ENST00000537634 WIZO95785 1651 aa18.43■□□□□ 0.54
CHD4-207ENST00000537634 THOC2Q8NI27 1593 aaKnown RBP18.42■□□□□ 0.54
CHD4-207ENST00000537634 KIF21AQ7Z4S6 1674 aa18.38■□□□□ 0.53
CHD4-207ENST00000537634 PDS5BQ9NTI5 1447 aa18.37■□□□□ 0.53
CHD4-207ENST00000537634 CADPSQ9ULU8 1353 aa18.32■□□□□ 0.52
CHD4-207ENST00000537634 RSF1Q96T23 1441 aaPredicted RBP18.25■□□□□ 0.51
CHD4-207ENST00000537634 MRC2Q9UBG0 1479 aa18.22■□□□□ 0.51
CHD4-207ENST00000537634 TOP2AP11388 1531 aaKnown RBP18.21■□□□□ 0.51
CHD4-207ENST00000537634 CEP164Q9UPV0 1460 aa18.17■□□□□ 0.5
CHD4-207ENST00000537634 WDR62O43379 1518 aa18.17■□□□□ 0.5
CHD4-207ENST00000537634 CFTRP13569 1480 aa18.14■□□□□ 0.49
CHD4-207ENST00000537634 FANCD2Q9BXW9 1451 aa18.14■□□□□ 0.49
CHD4-207ENST00000537634 PRDM2Q13029 1718 aa18.03■□□□□ 0.48
CHD4-207ENST00000537634 URB2Q14146 1524 aaKnown RBP17.98■□□□□ 0.47
CHD4-207ENST00000537634 CCDC88BA6NC98 1476 aa17.97■□□□□ 0.47
CHD4-207ENST00000537634 TOPBP1Q92547 1522 aa17.8■□□□□ 0.44
CHD4-207ENST00000537634 IFT140Q96RY7 1462 aa17.79■□□□□ 0.44
CHD4-207ENST00000537634 ABCC8Q09428 1581 aa17.78■□□□□ 0.44
CHD4-207ENST00000537634 DNMBPQ6XZF7 1577 aa17.76■□□□□ 0.43
CHD4-207ENST00000537634 OSCARQ8IYS5 282 aa17.75■□□□□ 0.43
CHD4-207ENST00000537634 ZNF608Q9ULD9 1512 aaPredicted RBP17.73■□□□□ 0.43
CHD4-207ENST00000537634 TRIM41Q8WV44 630 aa17.73■□□□□ 0.43
CHD4-207ENST00000537634 EIF4G3O43432 1585 aaKnown RBP17.69■□□□□ 0.42
CHD4-207ENST00000537634 TARBP1Q13395 1621 aaKnown RBP17.64■□□□□ 0.41
CHD4-207ENST00000537634 POLA1P09884 1462 aaPredicted RBP17.62■□□□□ 0.41
CHD4-207ENST00000537634 AQRO60306 1485 aaKnown RBP eCLIP17.57■□□□□ 0.42e-6■■■□□ 16.8
CHD4-207ENST00000537634 RIMBP3CA6NJZ7 1639 aa17.55■□□□□ 0.4
CHD4-207ENST00000537634 RIMBP3BA6NNM3 1639 aa17.55■□□□□ 0.4
CHD4-207ENST00000537634 RIMBP3Q9UFD9 1639 aa17.55■□□□□ 0.4
CHD4-207ENST00000537634 CHD1O14646 1710 aa17.55■□□□□ 0.4
CHD4-207ENST00000537634 RAD54L2Q9Y4B4 1467 aa17.54■□□□□ 0.4
CHD4-207ENST00000537634 FGD5Q6ZNL6 1462 aa17.53■□□□□ 0.4
CHD4-207ENST00000537634 SOGA1O94964 1423 aa17.53■□□□□ 0.4
CHD4-207ENST00000537634 CUX1P39880 1505 aa17.51■□□□□ 0.39
CHD4-207ENST00000537634 SUPT5HO00267 1087 aaKnown RBP17.5■□□□□ 0.39
CHD4-207ENST00000537634 ARHGEF11O15085 1522 aa17.5■□□□□ 0.39
CHD4-207ENST00000537634 WDR97A6NE52 1622 aa17.49■□□□□ 0.39
CHD4-207ENST00000537634 TDRD9Q8NDG6 1382 aaKnown RBP17.48■□□□□ 0.39
CHD4-207ENST00000537634 FBLN2P98095 1184 aa17.46■□□□□ 0.39
CHD4-207ENST00000537634 SNAPC4Q5SXM2 1469 aa17.43■□□□□ 0.38
CHD4-207ENST00000537634 MAGI1Q96QZ7 1491 aaPredicted RBP17.39■□□□□ 0.37
CHD4-207ENST00000537634 GRIN2BQ13224 1484 aa17.38■□□□□ 0.37
CHD4-207ENST00000537634 PBRM1Q86U86 1689 aa17.36■□□□□ 0.37
CHD4-207ENST00000537634 SYNJ1O43426 1573 aa17.34■□□□□ 0.37
CHD4-207ENST00000537634 CHMP7Q8WUX9 453 aaPredicted RBP17.34■□□□□ 0.37
CHD4-207ENST00000537634 SYNJ2O15056 1496 aa17.33■□□□□ 0.37
CHD4-207ENST00000537634 GAPVD1Q14C86 1478 aa17.33■□□□□ 0.37
CHD4-207ENST00000537634 CYB5RLQ6IPT4 315 aa17.33■□□□□ 0.36
CHD4-207ENST00000537634 CLASP1Q7Z460 1538 aa17.32■□□□□ 0.36
CHD4-207ENST00000537634 ABCA10Q8WWZ4 1543 aa17.32■□□□□ 0.36
CHD4-207ENST00000537634 ARAP1Q96P48 1450 aa17.32■□□□□ 0.36
CHD4-207ENST00000537634 ABCA5Q8WWZ7 1642 aa17.31■□□□□ 0.36
CHD4-207ENST00000537634 BIVM-ERCC5R4GMW8 1640 aa17.27■□□□□ 0.36
CHD4-207ENST00000537634 WRNQ14191 1432 aaPredicted RBP eCLIP17.27■□□□□ 0.35
CHD4-207ENST00000537634 TOP2BQ02880 1626 aa17.26■□□□□ 0.35
CHD4-207ENST00000537634 AEBP2Q6ZN18 517 aaPredicted RBP17.21■□□□□ 0.35
CHD4-207ENST00000537634 ADAMTS12P58397 1594 aa17.19■□□□□ 0.34
CHD4-207ENST00000537634 GRIN2AQ12879 1464 aa17.17■□□□□ 0.34
CHD4-207ENST00000537634 TRHP20396 242 aaPredicted RBP17.14■□□□□ 0.33
CHD4-207ENST00000537634 ERICH3Q5RHP9 1530 aa17.12■□□□□ 0.33
CHD4-207ENST00000537634 FHAD1B1AJZ9 1412 aa17.11■□□□□ 0.33
CHD4-207ENST00000537634 CEP170Q5SW79 1584 aa17.11■□□□□ 0.33
CHD4-207ENST00000537634 NUP160Q12769 1436 aa17.09■□□□□ 0.33
CHD4-207ENST00000537634 ERCC6L2Q5T890 1561 aa17.04■□□□□ 0.32
CHD4-207ENST00000537634 SHROOM2Q13796 1616 aa17.03■□□□□ 0.32
CHD4-207ENST00000537634 RUSC2Q8N2Y8 1516 aa16.95■□□□□ 0.3
CHD4-207ENST00000537634 PRG4Q92954 1404 aaPredicted RBP16.93■□□□□ 0.3
CHD4-207ENST00000537634 KIF27Q86VH2 1401 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms