Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC32.33■■■□□ 2.77
RIPK4P57078 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
RIPK4P57078 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
RIPK4P57078 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC32.32■■■□□ 2.76
RIPK4P57078 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC32.32■■■□□ 2.76
RIPK4P57078 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC32.32■■■□□ 2.76
RIPK4P57078 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
RIPK4P57078 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC32.31■■■□□ 2.76
RIPK4P57078 PFN2-211ENST00000489155 636 ntTSL 4 BASIC32.31■■■□□ 2.76
RIPK4P57078 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
RIPK4P57078 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC32.31■■■□□ 2.76
RIPK4P57078 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC32.31■■■□□ 2.76
RIPK4P57078 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC32.31■■■□□ 2.76
RIPK4P57078 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
RIPK4P57078 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC32.3■■■□□ 2.76
RIPK4P57078 U85056.1-201ENST00000616429 682 ntBASIC32.3■■■□□ 2.76
RIPK4P57078 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC32.29■■■□□ 2.76
RIPK4P57078 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
RIPK4P57078 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
RIPK4P57078 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC32.28■■■□□ 2.76
RIPK4P57078 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC32.28■■■□□ 2.76
RIPK4P57078 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
RIPK4P57078 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC32.28■■■□□ 2.76
RIPK4P57078 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC32.28■■■□□ 2.76
RIPK4P57078 AP004609.3-201ENST00000610705 1884 ntBASIC32.28■■■□□ 2.76
RIPK4P57078 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC32.27■■■□□ 2.76
RIPK4P57078 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC32.27■■■□□ 2.76
RIPK4P57078 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
RIPK4P57078 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC32.27■■■□□ 2.76
RIPK4P57078 AC142472.1-201ENST00000612013 1741 ntBASIC32.26■■■□□ 2.76
RIPK4P57078 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
RIPK4P57078 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC32.26■■■□□ 2.75
RIPK4P57078 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
RIPK4P57078 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC32.25■■■□□ 2.75
RIPK4P57078 RP9P-202ENST00000450133 1212 ntBASIC32.25■■■□□ 2.75
RIPK4P57078 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC32.25■■■□□ 2.75
RIPK4P57078 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC32.24■■■□□ 2.75
RIPK4P57078 MIR3960-201ENST00000583311 91 ntBASIC32.24■■■□□ 2.75
RIPK4P57078 NTF6A-201ENST00000591175 560 ntBASIC32.24■■■□□ 2.75
RIPK4P57078 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC32.24■■■□□ 2.75
RIPK4P57078 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
RIPK4P57078 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
RIPK4P57078 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC32.23■■■□□ 2.75
RIPK4P57078 AC093536.1-201ENST00000569153 554 ntBASIC32.22■■■□□ 2.75
RIPK4P57078 AC026202.3-201ENST00000600805 1127 ntBASIC32.22■■■□□ 2.75
RIPK4P57078 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC32.22■■■□□ 2.75
RIPK4P57078 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
RIPK4P57078 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
RIPK4P57078 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC32.21■■■□□ 2.75
RIPK4P57078 AC009831.1-201ENST00000580420 1582 ntBASIC32.21■■■□□ 2.75
RIPK4P57078 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
RIPK4P57078 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC32.21■■■□□ 2.75
RIPK4P57078 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
RIPK4P57078 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC32.2■■■□□ 2.75
RIPK4P57078 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC32.2■■■□□ 2.75
RIPK4P57078 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC32.2■■■□□ 2.75
RIPK4P57078 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
RIPK4P57078 GFER-205ENST00000569451 517 ntTSL 5 BASIC32.2■■■□□ 2.75
RIPK4P57078 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC32.2■■■□□ 2.75
RIPK4P57078 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC32.19■■■□□ 2.74
RIPK4P57078 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC32.19■■■□□ 2.74
RIPK4P57078 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
RIPK4P57078 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC32.19■■■□□ 2.74
RIPK4P57078 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC32.19■■■□□ 2.74
RIPK4P57078 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
RIPK4P57078 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
RIPK4P57078 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
RIPK4P57078 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
RIPK4P57078 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
RIPK4P57078 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
RIPK4P57078 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC32.18■■■□□ 2.74
RIPK4P57078 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
RIPK4P57078 AC133552.2-201ENST00000619106 1032 ntBASIC32.18■■■□□ 2.74
RIPK4P57078 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC32.18■■■□□ 2.74
RIPK4P57078 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC32.18■■■□□ 2.74
RIPK4P57078 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC32.18■■■□□ 2.74
RIPK4P57078 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC32.18■■■□□ 2.74
RIPK4P57078 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC32.17■■■□□ 2.74
RIPK4P57078 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
RIPK4P57078 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
RIPK4P57078 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC32.17■■■□□ 2.74
RIPK4P57078 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC32.17■■■□□ 2.74
RIPK4P57078 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
RIPK4P57078 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC32.17■■■□□ 2.74
RIPK4P57078 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC32.16■■■□□ 2.74
RIPK4P57078 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
RIPK4P57078 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC32.16■■■□□ 2.74
RIPK4P57078 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC32.16■■■□□ 2.74
RIPK4P57078 RAP2CP1-202ENST00000605179 643 ntBASIC32.15■■■□□ 2.74
RIPK4P57078 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC32.15■■■□□ 2.74
RIPK4P57078 AL121749.1-202ENST00000609313 2153 ntBASIC32.14■■■□□ 2.74
RIPK4P57078 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
RIPK4P57078 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
RIPK4P57078 KRT18P60-201ENST00000312876 1297 ntBASIC32.13■■■□□ 2.73
RIPK4P57078 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC32.13■■■□□ 2.73
RIPK4P57078 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC32.13■■■□□ 2.73
RIPK4P57078 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
RIPK4P57078 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC32.13■■■□□ 2.73
RIPK4P57078 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC32.12■■■□□ 2.73
RIPK4P57078 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC32.11■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms