Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC30.48■■■□□ 2.47
COL4A5P29400 ST7-AS1-201ENST00000456775 1889 ntBASIC30.48■■■□□ 2.47
COL4A5P29400 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC30.48■■■□□ 2.47
COL4A5P29400 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
COL4A5P29400 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
COL4A5P29400 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
COL4A5P29400 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC30.47■■■□□ 2.47
COL4A5P29400 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL4A5P29400 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
COL4A5P29400 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC30.47■■■□□ 2.47
COL4A5P29400 OR2A1-AS1-204ENST00000470435 602 ntBASIC30.47■■■□□ 2.47
COL4A5P29400 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL4A5P29400 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
COL4A5P29400 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC30.46■■■□□ 2.47
COL4A5P29400 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
COL4A5P29400 THA1P-201ENST00000590384 1145 ntBASIC30.46■■■□□ 2.47
COL4A5P29400 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
COL4A5P29400 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC30.45■■■□□ 2.46
COL4A5P29400 AC074183.2-201ENST00000623112 922 ntBASIC30.45■■■□□ 2.46
COL4A5P29400 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC30.44■■■□□ 2.46
COL4A5P29400 PFN2-211ENST00000489155 636 ntTSL 4 BASIC30.44■■■□□ 2.46
COL4A5P29400 MIR4508-201ENST00000584178 70 ntBASIC30.44■■■□□ 2.46
COL4A5P29400 AC139795.1-202ENST00000500444 432 ntBASIC30.43■■■□□ 2.46
COL4A5P29400 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC30.43■■■□□ 2.46
COL4A5P29400 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC30.43■■■□□ 2.46
COL4A5P29400 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.43■■■□□ 2.46
COL4A5P29400 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL4A5P29400 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
COL4A5P29400 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC30.42■■■□□ 2.46
COL4A5P29400 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC30.42■■■□□ 2.46
COL4A5P29400 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL4A5P29400 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC30.42■■■□□ 2.46
COL4A5P29400 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
COL4A5P29400 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL4A5P29400 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL4A5P29400 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL4A5P29400 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC30.41■■■□□ 2.46
COL4A5P29400 AC103724.3-201ENST00000564481 992 ntBASIC30.41■■■□□ 2.46
COL4A5P29400 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
COL4A5P29400 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL4A5P29400 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC30.4■■■□□ 2.46
COL4A5P29400 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC30.4■■■□□ 2.46
COL4A5P29400 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC30.39■■■□□ 2.46
COL4A5P29400 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL4A5P29400 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
COL4A5P29400 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
COL4A5P29400 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.38■■■□□ 2.45
COL4A5P29400 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC30.38■■■□□ 2.45
COL4A5P29400 MIR3960-201ENST00000583311 91 ntBASIC30.38■■■□□ 2.45
COL4A5P29400 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC30.38■■■□□ 2.45
COL4A5P29400 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL4A5P29400 YBX1P4-201ENST00000392794 808 ntBASIC30.37■■■□□ 2.45
COL4A5P29400 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC30.37■■■□□ 2.45
COL4A5P29400 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL4A5P29400 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
COL4A5P29400 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
COL4A5P29400 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC30.36■■■□□ 2.45
COL4A5P29400 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL4A5P29400 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC30.36■■■□□ 2.45
COL4A5P29400 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
COL4A5P29400 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC30.35■■■□□ 2.45
COL4A5P29400 PRTG-204ENST00000561292 833 ntTSL 3 BASIC30.35■■■□□ 2.45
COL4A5P29400 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC30.35■■■□□ 2.45
COL4A5P29400 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
COL4A5P29400 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
COL4A5P29400 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
COL4A5P29400 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
COL4A5P29400 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC30.33■■■□□ 2.45
COL4A5P29400 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL4A5P29400 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL4A5P29400 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL4A5P29400 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL4A5P29400 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL4A5P29400 IDNK-201ENST00000376417 511 ntTSL 5 BASIC30.31■■■□□ 2.44
COL4A5P29400 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL4A5P29400 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
COL4A5P29400 IDNK-203ENST00000405990 629 ntTSL 2 BASIC30.3■■■□□ 2.44
COL4A5P29400 AL356441.2-201ENST00000443009 864 ntBASIC30.3■■■□□ 2.44
COL4A5P29400 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC30.3■■■□□ 2.44
COL4A5P29400 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC30.3■■■□□ 2.44
COL4A5P29400 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
COL4A5P29400 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL4A5P29400 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
COL4A5P29400 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC30.29■■■□□ 2.44
COL4A5P29400 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC30.29■■■□□ 2.44
COL4A5P29400 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC30.29■■■□□ 2.44
COL4A5P29400 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC30.29■■■□□ 2.44
COL4A5P29400 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.29■■■□□ 2.44
COL4A5P29400 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC30.28■■■□□ 2.44
COL4A5P29400 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
COL4A5P29400 HYI-210ENST00000486909 905 ntTSL 5 BASIC30.27■■■□□ 2.44
COL4A5P29400 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL4A5P29400 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
COL4A5P29400 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC30.27■■■□□ 2.44
COL4A5P29400 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL4A5P29400 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC30.26■■■□□ 2.43
COL4A5P29400 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC30.26■■■□□ 2.43
COL4A5P29400 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL4A5P29400 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC30.25■■■□□ 2.43
COL4A5P29400 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC30.25■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms