Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGB3O15347 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
HMGB3O15347 AC127502.1-201ENST00000399971 1502 ntBASIC19.82■□□□□ 0.76
HMGB3O15347 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGB3O15347 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB3O15347 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGB3O15347 AL133380.1-201ENST00000506013 324 ntBASIC19.82■□□□□ 0.76
HMGB3O15347 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB3O15347 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB3O15347 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
HMGB3O15347 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB3O15347 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HMGB3O15347 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB3O15347 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB3O15347 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB3O15347 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB3O15347 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.79■□□□□ 0.76
HMGB3O15347 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB3O15347 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.79■□□□□ 0.76
HMGB3O15347 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB3O15347 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB3O15347 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
HMGB3O15347 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
HMGB3O15347 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.78■□□□□ 0.76
HMGB3O15347 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB3O15347 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGB3O15347 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HMGB3O15347 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.77■□□□□ 0.76
HMGB3O15347 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC19.77■□□□□ 0.76
HMGB3O15347 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC19.77■□□□□ 0.76
HMGB3O15347 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
HMGB3O15347 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB3O15347 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB3O15347 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.76■□□□□ 0.75
HMGB3O15347 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB3O15347 AP002365.1-201ENST00000603448 772 ntBASIC19.76■□□□□ 0.75
HMGB3O15347 AC145676.1-201ENST00000514988 2004 ntBASIC19.76■□□□□ 0.75
HMGB3O15347 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB3O15347 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB3O15347 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB3O15347 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
HMGB3O15347 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
HMGB3O15347 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB3O15347 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
HMGB3O15347 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB3O15347 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
HMGB3O15347 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.75■□□□□ 0.75
HMGB3O15347 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
HMGB3O15347 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.74■□□□□ 0.75
HMGB3O15347 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB3O15347 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB3O15347 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB3O15347 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB3O15347 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB3O15347 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
HMGB3O15347 KLF16-203ENST00000592313 508 ntTSL 3 BASIC19.72■□□□□ 0.75
HMGB3O15347 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
HMGB3O15347 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.72■□□□□ 0.75
HMGB3O15347 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB3O15347 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB3O15347 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB3O15347 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB3O15347 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB3O15347 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB3O15347 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB3O15347 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB3O15347 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB3O15347 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB3O15347 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
HMGB3O15347 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB3O15347 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB3O15347 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB3O15347 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.7■□□□□ 0.74
HMGB3O15347 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.7■□□□□ 0.74
HMGB3O15347 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGB3O15347 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
HMGB3O15347 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.69■□□□□ 0.74
HMGB3O15347 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC19.69■□□□□ 0.74
HMGB3O15347 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
HMGB3O15347 AC093323.1-202ENST00000635031 2045 ntBASIC19.69■□□□□ 0.74
HMGB3O15347 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
HMGB3O15347 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB3O15347 AP002414.2-202ENST00000590929 1450 ntBASIC19.68■□□□□ 0.74
HMGB3O15347 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB3O15347 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB3O15347 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB3O15347 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB3O15347 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB3O15347 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
HMGB3O15347 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.67■□□□□ 0.74
HMGB3O15347 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB3O15347 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB3O15347 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 638.9 ms