Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGB3O15347 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
HMGB3O15347 AC127502.1-201ENST00000399971 1502 ntBASIC19.82■□□□□ 0.76
HMGB3O15347 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGB3O15347 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB3O15347 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGB3O15347 AL133380.1-201ENST00000506013 324 ntBASIC19.82■□□□□ 0.76
HMGB3O15347 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB3O15347 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB3O15347 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
HMGB3O15347 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB3O15347 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HMGB3O15347 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB3O15347 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB3O15347 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB3O15347 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB3O15347 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.79■□□□□ 0.76
HMGB3O15347 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB3O15347 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.79■□□□□ 0.76
HMGB3O15347 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB3O15347 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB3O15347 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
HMGB3O15347 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
HMGB3O15347 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.78■□□□□ 0.76
HMGB3O15347 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB3O15347 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGB3O15347 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HMGB3O15347 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.77■□□□□ 0.76
HMGB3O15347 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC19.77■□□□□ 0.76
HMGB3O15347 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC19.77■□□□□ 0.76
HMGB3O15347 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
HMGB3O15347 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB3O15347 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB3O15347 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.76■□□□□ 0.75
HMGB3O15347 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB3O15347 AP002365.1-201ENST00000603448 772 ntBASIC19.76■□□□□ 0.75
HMGB3O15347 AC145676.1-201ENST00000514988 2004 ntBASIC19.76■□□□□ 0.75
HMGB3O15347 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB3O15347 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB3O15347 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB3O15347 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
HMGB3O15347 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
HMGB3O15347 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB3O15347 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
HMGB3O15347 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB3O15347 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
HMGB3O15347 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.75■□□□□ 0.75
HMGB3O15347 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
HMGB3O15347 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.74■□□□□ 0.75
HMGB3O15347 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB3O15347 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB3O15347 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB3O15347 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB3O15347 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB3O15347 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB3O15347 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
HMGB3O15347 KLF16-203ENST00000592313 508 ntTSL 3 BASIC19.72■□□□□ 0.75
HMGB3O15347 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
HMGB3O15347 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.72■□□□□ 0.75
HMGB3O15347 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB3O15347 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB3O15347 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB3O15347 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB3O15347 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB3O15347 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB3O15347 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB3O15347 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB3O15347 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB3O15347 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB3O15347 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
HMGB3O15347 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB3O15347 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB3O15347 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB3O15347 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.7■□□□□ 0.74
HMGB3O15347 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.7■□□□□ 0.74
HMGB3O15347 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGB3O15347 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
HMGB3O15347 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.69■□□□□ 0.74
HMGB3O15347 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC19.69■□□□□ 0.74
HMGB3O15347 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
HMGB3O15347 AC093323.1-202ENST00000635031 2045 ntBASIC19.69■□□□□ 0.74
HMGB3O15347 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
HMGB3O15347 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB3O15347 AP002414.2-202ENST00000590929 1450 ntBASIC19.68■□□□□ 0.74
HMGB3O15347 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB3O15347 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB3O15347 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB3O15347 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB3O15347 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB3O15347 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
HMGB3O15347 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.67■□□□□ 0.74
HMGB3O15347 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB3O15347 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB3O15347 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms