Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDCBPO00560 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDCBPO00560 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SDCBPO00560 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.87■□□□□ 0.93
SDCBPO00560 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.87■□□□□ 0.93
SDCBPO00560 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SDCBPO00560 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SDCBPO00560 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SDCBPO00560 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SDCBPO00560 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDCBPO00560 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
SDCBPO00560 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.86■□□□□ 0.93
SDCBPO00560 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDCBPO00560 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.86■□□□□ 0.93
SDCBPO00560 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SDCBPO00560 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SDCBPO00560 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SDCBPO00560 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.84■□□□□ 0.93
SDCBPO00560 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SDCBPO00560 AC092803.2-201ENST00000564287 1899 ntBASIC20.84■□□□□ 0.93
SDCBPO00560 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SDCBPO00560 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SDCBPO00560 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SDCBPO00560 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SDCBPO00560 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SDCBPO00560 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SDCBPO00560 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SDCBPO00560 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SDCBPO00560 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
SDCBPO00560 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.83■□□□□ 0.92
SDCBPO00560 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SDCBPO00560 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SDCBPO00560 AP004609.3-201ENST00000610705 1884 ntBASIC20.82■□□□□ 0.92
SDCBPO00560 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
SDCBPO00560 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.82■□□□□ 0.92
SDCBPO00560 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SDCBPO00560 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SDCBPO00560 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SDCBPO00560 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SDCBPO00560 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SDCBPO00560 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SDCBPO00560 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.81■□□□□ 0.92
SDCBPO00560 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.81■□□□□ 0.92
SDCBPO00560 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.81■□□□□ 0.92
SDCBPO00560 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SDCBPO00560 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SDCBPO00560 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDCBPO00560 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDCBPO00560 DUSP8P4-201ENST00000399538 1761 ntBASIC20.8■□□□□ 0.92
SDCBPO00560 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDCBPO00560 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDCBPO00560 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDCBPO00560 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SDCBPO00560 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SDCBPO00560 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.79■□□□□ 0.92
SDCBPO00560 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SDCBPO00560 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.79■□□□□ 0.92
SDCBPO00560 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.79■□□□□ 0.92
SDCBPO00560 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SDCBPO00560 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
SDCBPO00560 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.79■□□□□ 0.92
SDCBPO00560 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SDCBPO00560 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SDCBPO00560 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SDCBPO00560 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SDCBPO00560 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SDCBPO00560 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDCBPO00560 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDCBPO00560 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDCBPO00560 AC110285.7-201ENST00000624417 1536 ntBASIC20.78■□□□□ 0.92
SDCBPO00560 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.77■□□□□ 0.92
SDCBPO00560 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.77■□□□□ 0.92
SDCBPO00560 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SDCBPO00560 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDCBPO00560 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SDCBPO00560 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.76■□□□□ 0.91
SDCBPO00560 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SDCBPO00560 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SDCBPO00560 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.75■□□□□ 0.91
SDCBPO00560 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDCBPO00560 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDCBPO00560 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SDCBPO00560 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SDCBPO00560 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SDCBPO00560 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SDCBPO00560 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SDCBPO00560 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
SDCBPO00560 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SDCBPO00560 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SDCBPO00560 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.72■□□□□ 0.91
SDCBPO00560 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SDCBPO00560 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.72■□□□□ 0.91
SDCBPO00560 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.71■□□□□ 0.91
SDCBPO00560 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
SDCBPO00560 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SDCBPO00560 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SDCBPO00560 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SDCBPO00560 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC20.71■□□□□ 0.91
SDCBPO00560 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SDCBPO00560 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms