Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MMP28Q9H239 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MMP28Q9H239 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
MMP28Q9H239 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MMP28Q9H239 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
MMP28Q9H239 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MMP28Q9H239 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
MMP28Q9H239 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.75■■□□□ 1.07
MMP28Q9H239 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MMP28Q9H239 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
MMP28Q9H239 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MMP28Q9H239 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MMP28Q9H239 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MMP28Q9H239 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
MMP28Q9H239 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MMP28Q9H239 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
MMP28Q9H239 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.73■■□□□ 1.07
MMP28Q9H239 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.73■■□□□ 1.07
MMP28Q9H239 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
MMP28Q9H239 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
MMP28Q9H239 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MMP28Q9H239 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
MMP28Q9H239 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.72■■□□□ 1.07
MMP28Q9H239 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MMP28Q9H239 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MMP28Q9H239 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MMP28Q9H239 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.72■■□□□ 1.07
MMP28Q9H239 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MMP28Q9H239 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MMP28Q9H239 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MMP28Q9H239 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MMP28Q9H239 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MMP28Q9H239 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MMP28Q9H239 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MMP28Q9H239 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MMP28Q9H239 AC133561.1-201ENST00000568600 2415 ntBASIC21.7■■□□□ 1.06
MMP28Q9H239 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MMP28Q9H239 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
MMP28Q9H239 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MMP28Q9H239 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MMP28Q9H239 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MMP28Q9H239 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MMP28Q9H239 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
MMP28Q9H239 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MMP28Q9H239 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.69■■□□□ 1.06
MMP28Q9H239 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MMP28Q9H239 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
MMP28Q9H239 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MMP28Q9H239 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.68■■□□□ 1.06
MMP28Q9H239 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MMP28Q9H239 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MMP28Q9H239 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.67■■□□□ 1.06
MMP28Q9H239 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MMP28Q9H239 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.67■■□□□ 1.06
MMP28Q9H239 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
MMP28Q9H239 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.67■■□□□ 1.06
MMP28Q9H239 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MMP28Q9H239 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
MMP28Q9H239 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MMP28Q9H239 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MMP28Q9H239 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MMP28Q9H239 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
MMP28Q9H239 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MMP28Q9H239 AC010864.1-201ENST00000609407 1511 ntBASIC21.65■■□□□ 1.06
MMP28Q9H239 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MMP28Q9H239 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MMP28Q9H239 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
MMP28Q9H239 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
MMP28Q9H239 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MMP28Q9H239 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MMP28Q9H239 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MMP28Q9H239 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.64■■□□□ 1.05
MMP28Q9H239 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
MMP28Q9H239 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MMP28Q9H239 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
MMP28Q9H239 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.64■■□□□ 1.05
MMP28Q9H239 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MMP28Q9H239 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.63■■□□□ 1.05
MMP28Q9H239 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MMP28Q9H239 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MMP28Q9H239 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
MMP28Q9H239 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MMP28Q9H239 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
MMP28Q9H239 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.62■■□□□ 1.05
MMP28Q9H239 DUSP8P4-201ENST00000399538 1761 ntBASIC21.62■■□□□ 1.05
MMP28Q9H239 MIR762-201ENST00000390236 83 ntBASIC21.62■■□□□ 1.05
MMP28Q9H239 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MMP28Q9H239 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MMP28Q9H239 AP004833.2-201ENST00000532228 1454 ntBASIC21.62■■□□□ 1.05
MMP28Q9H239 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MMP28Q9H239 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MMP28Q9H239 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MMP28Q9H239 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.61■■□□□ 1.05
MMP28Q9H239 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
MMP28Q9H239 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MMP28Q9H239 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.61■■□□□ 1.05
MMP28Q9H239 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.6■■□□□ 1.05
MMP28Q9H239 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
MMP28Q9H239 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
MMP28Q9H239 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms