Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 HES6-204ENST00000409182 863 ntTSL 2 BASIC30.64■■■□□ 2.5
ZNF541Q9H0D2 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
ZNF541Q9H0D2 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
ZNF541Q9H0D2 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC30.64■■■□□ 2.49
ZNF541Q9H0D2 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
ZNF541Q9H0D2 GUSBP5-201ENST00000418136 578 ntBASIC30.63■■■□□ 2.49
ZNF541Q9H0D2 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
ZNF541Q9H0D2 AL359258.2-201ENST00000564063 1566 ntBASIC30.62■■■□□ 2.49
ZNF541Q9H0D2 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC30.61■■■□□ 2.49
ZNF541Q9H0D2 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC30.61■■■□□ 2.49
ZNF541Q9H0D2 RAP2CP1-202ENST00000605179 643 ntBASIC30.61■■■□□ 2.49
ZNF541Q9H0D2 PVT1_1.1-201ENST00000615125 194 ntBASIC30.61■■■□□ 2.49
ZNF541Q9H0D2 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.61■■■□□ 2.49
ZNF541Q9H0D2 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC30.61■■■□□ 2.49
ZNF541Q9H0D2 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
ZNF541Q9H0D2 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.61■■■□□ 2.49
ZNF541Q9H0D2 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC30.6■■■□□ 2.49
ZNF541Q9H0D2 AC093536.1-201ENST00000569153 554 ntBASIC30.6■■■□□ 2.49
ZNF541Q9H0D2 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
ZNF541Q9H0D2 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC30.6■■■□□ 2.49
ZNF541Q9H0D2 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
ZNF541Q9H0D2 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC30.59■■■□□ 2.49
ZNF541Q9H0D2 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
ZNF541Q9H0D2 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC30.59■■■□□ 2.49
ZNF541Q9H0D2 AC074183.2-201ENST00000623112 922 ntBASIC30.59■■■□□ 2.49
ZNF541Q9H0D2 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC30.59■■■□□ 2.49
ZNF541Q9H0D2 OR2A1-AS1-204ENST00000470435 602 ntBASIC30.58■■■□□ 2.49
ZNF541Q9H0D2 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC30.57■■■□□ 2.48
ZNF541Q9H0D2 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
ZNF541Q9H0D2 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
ZNF541Q9H0D2 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC30.57■■■□□ 2.48
ZNF541Q9H0D2 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
ZNF541Q9H0D2 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC30.56■■■□□ 2.48
ZNF541Q9H0D2 YBX1P4-201ENST00000392794 808 ntBASIC30.55■■■□□ 2.48
ZNF541Q9H0D2 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC30.55■■■□□ 2.48
ZNF541Q9H0D2 AC139795.1-202ENST00000500444 432 ntBASIC30.55■■■□□ 2.48
ZNF541Q9H0D2 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC30.54■■■□□ 2.48
ZNF541Q9H0D2 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
ZNF541Q9H0D2 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
ZNF541Q9H0D2 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC30.54■■■□□ 2.48
ZNF541Q9H0D2 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC30.54■■■□□ 2.48
ZNF541Q9H0D2 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC30.54■■■□□ 2.48
ZNF541Q9H0D2 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
ZNF541Q9H0D2 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.54■■■□□ 2.48
ZNF541Q9H0D2 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC30.53■■■□□ 2.48
ZNF541Q9H0D2 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
ZNF541Q9H0D2 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC30.53■■■□□ 2.48
ZNF541Q9H0D2 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
ZNF541Q9H0D2 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
ZNF541Q9H0D2 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
ZNF541Q9H0D2 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
ZNF541Q9H0D2 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC30.52■■■□□ 2.48
ZNF541Q9H0D2 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC30.52■■■□□ 2.48
ZNF541Q9H0D2 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC30.51■■■□□ 2.48
ZNF541Q9H0D2 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC30.51■■■□□ 2.48
ZNF541Q9H0D2 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
ZNF541Q9H0D2 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
ZNF541Q9H0D2 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC30.5■■■□□ 2.47
ZNF541Q9H0D2 MIR6765-201ENST00000614092 87 ntBASIC30.5■■■□□ 2.47
ZNF541Q9H0D2 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC30.5■■■□□ 2.47
ZNF541Q9H0D2 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
ZNF541Q9H0D2 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
ZNF541Q9H0D2 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC30.5■■■□□ 2.47
ZNF541Q9H0D2 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC30.49■■■□□ 2.47
ZNF541Q9H0D2 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
ZNF541Q9H0D2 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
ZNF541Q9H0D2 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC30.48■■■□□ 2.47
ZNF541Q9H0D2 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC30.48■■■□□ 2.47
ZNF541Q9H0D2 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC30.47■■■□□ 2.47
ZNF541Q9H0D2 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC30.47■■■□□ 2.47
ZNF541Q9H0D2 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
ZNF541Q9H0D2 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
ZNF541Q9H0D2 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
ZNF541Q9H0D2 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC30.47■■■□□ 2.47
ZNF541Q9H0D2 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
ZNF541Q9H0D2 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC30.47■■■□□ 2.47
ZNF541Q9H0D2 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
ZNF541Q9H0D2 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC30.46■■■□□ 2.47
ZNF541Q9H0D2 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC30.46■■■□□ 2.47
ZNF541Q9H0D2 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC30.45■■■□□ 2.46
ZNF541Q9H0D2 AL356441.2-201ENST00000443009 864 ntBASIC30.45■■■□□ 2.46
ZNF541Q9H0D2 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC30.45■■■□□ 2.46
ZNF541Q9H0D2 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
ZNF541Q9H0D2 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
ZNF541Q9H0D2 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC30.44■■■□□ 2.46
ZNF541Q9H0D2 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.44■■■□□ 2.46
ZNF541Q9H0D2 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC30.44■■■□□ 2.46
ZNF541Q9H0D2 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC30.44■■■□□ 2.46
ZNF541Q9H0D2 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
ZNF541Q9H0D2 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC30.44■■■□□ 2.46
ZNF541Q9H0D2 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC30.44■■■□□ 2.46
ZNF541Q9H0D2 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC30.44■■■□□ 2.46
ZNF541Q9H0D2 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
ZNF541Q9H0D2 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
ZNF541Q9H0D2 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
ZNF541Q9H0D2 MIR4508-201ENST00000584178 70 ntBASIC30.43■■■□□ 2.46
ZNF541Q9H0D2 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC30.43■■■□□ 2.46
ZNF541Q9H0D2 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
ZNF541Q9H0D2 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC30.42■■■□□ 2.46
ZNF541Q9H0D2 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms