Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB3O15347 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB3O15347 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB3O15347 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB3O15347 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB3O15347 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HMGB3O15347 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB3O15347 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB3O15347 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB3O15347 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.95■□□□□ 0.78
HMGB3O15347 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB3O15347 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC19.95■□□□□ 0.78
HMGB3O15347 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.95■□□□□ 0.78
HMGB3O15347 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB3O15347 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB3O15347 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB3O15347 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB3O15347 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
HMGB3O15347 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB3O15347 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB3O15347 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB3O15347 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC19.94■□□□□ 0.78
HMGB3O15347 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB3O15347 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB3O15347 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGB3O15347 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB3O15347 AC091060.1-201ENST00000623524 1766 ntBASIC19.94■□□□□ 0.78
HMGB3O15347 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
HMGB3O15347 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB3O15347 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
HMGB3O15347 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC19.93■□□□□ 0.78
HMGB3O15347 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGB3O15347 AP004833.2-201ENST00000532228 1454 ntBASIC19.93■□□□□ 0.78
HMGB3O15347 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGB3O15347 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HMGB3O15347 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB3O15347 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB3O15347 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB3O15347 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
HMGB3O15347 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB3O15347 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB3O15347 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.92■□□□□ 0.78
HMGB3O15347 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
HMGB3O15347 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
HMGB3O15347 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
HMGB3O15347 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB3O15347 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB3O15347 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
HMGB3O15347 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
HMGB3O15347 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
HMGB3O15347 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB3O15347 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
HMGB3O15347 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.9■□□□□ 0.78
HMGB3O15347 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
HMGB3O15347 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC19.9■□□□□ 0.78
HMGB3O15347 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
HMGB3O15347 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.9■□□□□ 0.78
HMGB3O15347 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGB3O15347 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGB3O15347 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGB3O15347 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGB3O15347 AC020928.2-201ENST00000588717 2197 ntBASIC19.89■□□□□ 0.77
HMGB3O15347 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGB3O15347 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGB3O15347 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB3O15347 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB3O15347 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB3O15347 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB3O15347 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
HMGB3O15347 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB3O15347 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB3O15347 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB3O15347 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB3O15347 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
HMGB3O15347 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB3O15347 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HMGB3O15347 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB3O15347 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.87■□□□□ 0.77
HMGB3O15347 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB3O15347 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB3O15347 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
HMGB3O15347 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC19.86■□□□□ 0.77
HMGB3O15347 AC100797.4-201ENST00000631653 1827 ntBASIC19.86■□□□□ 0.77
HMGB3O15347 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
HMGB3O15347 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
HMGB3O15347 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGB3O15347 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGB3O15347 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB3O15347 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
HMGB3O15347 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB3O15347 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB3O15347 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB3O15347 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB3O15347 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
HMGB3O15347 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB3O15347 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.84■□□□□ 0.77
HMGB3O15347 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB3O15347 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.83■□□□□ 0.77
HMGB3O15347 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB3O15347 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms